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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE
LNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yss:y 139 139 1.0000 1.0000 1.0000 1.76e-97 7jss:8, 7jsw:8, 7jsz:8, 7jt1:8, 7jt2:8, 7jt3:8, 7jt3:9, 4v95:AY, 6yst:y, 6ysu:y
2 8oin:Aa 381 116 0.2734 0.0997 0.3276 7.73e-06 8oip:Aa, 8oiq:Aa, 8oir:Aa, 8ois:Aa, 8oit:Aa
3 7nql:BL 137 104 0.2086 0.2117 0.2788 1.25e-05
4 6c4i:v 362 97 0.2086 0.0801 0.2990 4.24e-05 6c4h:v, 5czp:XY, 5czp:QY, 5dfe:QY, 5dfe:XY, 5h5u:4, 5mdv:7, 5mdw:7, 5mgp:z, 1ml5:Z, 7o1c:B9, 6og7:8, 6ogf:8, 6ogg:8, 7oj0:8, 6ost:7, 6ot3:A, 6ouo:A, 8p16:6, 8p17:6, 8p18:6, 8qk7:6, 5u4i:v, 5u9f:Z, 5u9g:Z
5 7m5d:A 360 105 0.2518 0.0972 0.3333 5.49e-05 8akn:W, 6b4v:JA, 6b4v:NC, 6boh:JA, 6boh:OC, 6bok:GD, 6bok:HD, 6dnc:MA, 8fzd:w, 8fze:w, 8fzg:w, 8fzh:w, 6gwt:v, 6gxm:v, 6gxn:v, 6gxo:v, 5j30:QY, 5j30:XY, 5j3c:QY, 5j3c:XY, 5j4d:JA, 5j4d:OC, 5o2r:v, 6orl:A, 6osk:A, 6osq:A
6 7nqh:BL 250 100 0.2230 0.1240 0.3100 0.002
7 4v63:AX 354 102 0.2302 0.0904 0.3137 0.011 4v4r:AY, 4v63:CX, 4v7p:AV, 4v7p:DV
8 6szs:z 362 80 0.1799 0.0691 0.3125 0.021
9 7sa4:8 203 77 0.2014 0.1379 0.3636 0.030
10 7a5h:C 114 80 0.1583 0.1930 0.2750 0.080
11 4v4s:AY 365 80 0.1942 0.0740 0.3375 0.21 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
12 4hs9:A 287 106 0.2158 0.1045 0.2830 2.2 4gw3:A, 4gxn:A, 6jd9:A
13 8esq:N 166 34 0.1151 0.0964 0.4706 3.4 8esr:N, 8etc:N, 8etg:N, 8eth:N, 8eti:N, 8etj:N, 8eup:N, 8euy:N, 8ev3:N
14 8azw:F 203 23 0.0935 0.0640 0.5652 4.5 8b2l:F3, 7qiw:P, 7qiz:P
15 4v6w:CN 203 63 0.1655 0.1133 0.3651 4.7 6xu6:CN, 6xu7:CN, 6xu8:CN
16 8fkp:L9 183 47 0.1295 0.0984 0.3830 6.4 8fkq:L9, 8fkr:L9, 8fks:L9, 8fkt:L9, 8fku:L9, 8fkv:L9, 8fkw:L9, 8fkx:L9, 8fky:L9, 8fkz:L9, 8ir1:U
17 1jki:A 525 50 0.0791 0.0210 0.2200 6.5 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
18 8ip8:HA 203 33 0.1151 0.0788 0.4848 7.8 8ipa:HA, 8ipb:HA, 8jiv:CN, 4v3p:LP, 4v7e:CN
19 7bt6:N 183 33 0.1151 0.0874 0.4848 7.9 6c0f:N, 6cb1:N, 8e5t:N, 6em1:N, 6em3:N, 6em4:N, 7ohp:N, 7ohr:N, 7ohs:N, 7ohu:N, 7ohw:N, 7ohx:N, 7ohy:N, 7r6q:N, 8v83:N, 8v84:N, 6ylx:N, 5z3g:R
20 4d5y:N 204 47 0.1295 0.0882 0.3830 8.0 7a01:12, 8a3d:l, 5aj0:AN, 8b5l:N, 8b6c:N, 9bdl:AL15, 9bdn:AL15, 9bdp:AL15, 7bhp:LN, 8bhf:A1, 8bpo:M2, 8btk:BN, 7cpu:LN, 7cpv:LN, 4d67:N, 6d90:N, 6d9j:N, 9f1b:BN, 9f1c:BN, 9f1d:BN, 7f5s:LN, 8fl2:L9, 8fl3:L9, 8fl4:L9, 8fl6:L9, 8fl7:L9, 8fl9:L9, 8fla:L9, 8flb:L9, 8flc:L9, 8fld:L9, 8fle:L9, 8flf:L9, 6frk:N, 6ftg:N, 6fti:N, 6ftj:N, 8g5y:LN, 8g5z:LN, 8g60:LN, 8g61:LN, 8g6j:LN, 8glp:LN, 6gz3:AN, 6gz4:AN, 6gz5:AN, 6hcf:N3, 6hcj:N3, 6hcm:N3, 6hcq:N3, 8idt:U, 8idy:U, 8ie3:U, 8ifd:2H, 8ife:2H, 8ine:U, 8inf:U, 8ink:U, 6ip5:2H, 6ip6:2H, 6ip8:2H, 8ipd:U, 8ipx:U, 8ipy:U, 8ir3:U, 3j7o:N, 3j7p:N, 3j7q:N, 3j7r:N, 3j92:N, 3jag:N, 3jah:N, 3jai:N, 3jaj:N, 3jan:N, 8jdj:S, 8jdk:S, 8jdl:S, 8jdm:S, 8k2c:LN, 5lks:LN, 6lqm:U, 6lsr:U, 6lss:U, 7ls1:H1, 7ls2:H1, 6lu8:U, 5lzs:N, 5lzt:N, 5lzu:N, 5lzv:N, 5lzw:N, 5lzx:N, 5lzy:N, 5lzz:N, 7mdz:N, 6mtb:N, 6mtc:N, 6mtd:N, 6mte:N, 7nfx:N, 7nwg:N3, 7nwh:N, 7nwi:N, 7o7y:BN, 7o7z:BN, 7o80:BN, 7o81:BN, 7obr:N, 8ohd:LN, 8oj0:LN, 8oj5:LN, 8oj8:LN, 6ole:O, 6olf:O, 6olg:AN, 6oli:O, 6olz:AN, 6om0:O, 6om7:O, 7ow7:t, 7oya:N1, 7oyb:N1, 7oyc:N1, 7oyd:N, 8p2k:BN, 6p5i:AN, 6p5j:AN, 6p5k:AN, 6p5n:AN, 8q7z:BN, 8q87:BN, 8qfd:N, 7qgg:O, 8qoi:LN, 7qvp:MN, 7qvp:LN, 7qwq:N, 7qwr:N, 7qws:N, 6qzp:LN, 6r5q:N, 6r6g:N, 6r6p:N, 6r7q:N, 8rjb:N, 8rjc:N, 8rjd:N, 8scb:N, 6sgc:N2, 6swa:M, 5t2c:t, 6t59:N3, 7tm3:N, 7toq:AL15, 7tor:AL15, 7tut:N, 7ucj:N, 7uck:N, 4ug0:LN, 4ujc:BN, 4ujd:AN, 4uje:CN, 4v5z:Bm, 4v6x:CN, 6w6l:O, 6xa1:LN, 7xnx:LN, 7xny:LN, 8xsx:LN, 8xsy:LN, 8xsz:LN, 6y0g:LN, 8y0w:LN, 8y0x:LN, 6y2l:LN, 6y57:LN, 6y6x:LN, 8yoo:LN, 8yop:LN, 6z6l:LN, 6z6m:LN, 6z6n:LN, 7zjw:LQ, 7zjx:LQ, 6zm7:LN, 6zme:LN, 6zmi:LN, 6zmo:LN, 6zvk:12
21 6hd7:t 838 41 0.0935 0.0155 0.3171 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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