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BioLiP
>protein
IVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE
LNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRG

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yss:y 139 132 1.0000 0.9496 1.0000 2.05e-92 7jss:8, 7jsw:8, 7jsz:8, 7jt1:8, 7jt2:8, 7jt3:8, 7jt3:9, 4v95:AY, 6yst:y, 6ysu:y
2 8oin:Aa 381 116 0.2879 0.0997 0.3276 5.68e-06 8oip:Aa, 8oiq:Aa, 8oir:Aa, 8ois:Aa, 8oit:Aa
3 7nql:BL 137 104 0.2197 0.2117 0.2788 1.17e-05
4 6c4i:v 362 97 0.2197 0.0801 0.2990 3.59e-05 6c4h:v, 5czp:XY, 5czp:QY, 5dfe:QY, 5dfe:XY, 5h5u:4, 5mdv:7, 5mdw:7, 5mgp:z, 1ml5:Z, 7o1c:B9, 6og7:8, 6ogf:8, 6ogg:8, 7oj0:8, 6ost:7, 6ot3:A, 6ouo:A, 8p16:6, 8p17:6, 8p18:6, 8qk7:6, 5u4i:v, 5u9f:Z, 5u9g:Z
5 7m5d:A 360 105 0.2652 0.0972 0.3333 4.78e-05 8akn:W, 6b4v:JA, 6b4v:NC, 6boh:JA, 6boh:OC, 6bok:GD, 6bok:HD, 6dnc:MA, 8fzd:w, 8fze:w, 8fzg:w, 8fzh:w, 6gwt:v, 6gxm:v, 6gxn:v, 6gxo:v, 5j30:QY, 5j30:XY, 5j3c:QY, 5j3c:XY, 5j4d:JA, 5j4d:OC, 5o2r:v, 6orl:A, 6osk:A, 6osq:A
6 7nqh:BL 250 100 0.2348 0.1240 0.3100 0.002
7 4v63:AX 354 102 0.2424 0.0904 0.3137 0.008 4v4r:AY, 4v63:CX, 4v7p:AV, 4v7p:DV
8 6szs:z 362 82 0.1894 0.0691 0.3049 0.018
9 7sa4:8 203 77 0.2121 0.1379 0.3636 0.026
10 7a5h:C 114 80 0.1667 0.1930 0.2750 0.079
11 4v4s:AY 365 80 0.2045 0.0740 0.3375 0.18 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
12 4hs9:A 287 106 0.2273 0.1045 0.2830 1.7 4gw3:A, 4gxn:A, 6jd9:A
13 8azw:F 203 23 0.0985 0.0640 0.5652 3.9 8b2l:F3, 7qiw:P, 7qiz:P
14 1jki:A 525 50 0.0833 0.0210 0.2200 5.8 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
15 4v6w:CN 203 53 0.1439 0.0936 0.3585 6.8 6xu6:CN, 6xu7:CN, 6xu8:CN
16 6hd7:t 838 41 0.0985 0.0155 0.3171 7.4
17 8fkp:L9 183 37 0.1061 0.0765 0.3784 9.5 8fkq:L9, 8fkr:L9, 8fks:L9, 8fkt:L9, 8fku:L9, 8fkv:L9, 8fkw:L9, 8fkx:L9, 8fky:L9, 8fkz:L9, 8ir1:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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