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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDK
FADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVS
FNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDP
SEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEM
AHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVRE
GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTV
NKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFE

The query sequence (length=530) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zt5:A 530 530 1.0000 1.0000 1.0000 0.0 2zt6:A, 2zt7:A, 2zt8:A, 2zxf:A
2 5e6m:B 506 543 0.9208 0.9644 0.8987 0.0
3 5e6m:A 519 382 0.6962 0.7110 0.9660 0.0 4kr2:A, 4kr3:A
4 5e6m:A 519 85 0.1585 0.1618 0.9882 1.59e-51 4kr2:A, 4kr3:A
5 4qei:A 562 385 0.6094 0.5747 0.8390 0.0
6 4qei:A 562 162 0.3057 0.2883 1.0000 6.28e-110
7 8slg:B 447 508 0.3000 0.3557 0.3130 1.43e-70 8slf:B, 8u2q:B
8 8slg:A 429 502 0.3019 0.3730 0.3187 1.37e-68
9 8u2q:A 398 351 0.2283 0.3040 0.3447 3.84e-53 8slf:A
10 1b76:A 442 384 0.2283 0.2738 0.3151 2.24e-52 1ati:B, 1b76:B, 1ggm:A, 1ggm:B
11 1b76:A 442 80 0.0698 0.0837 0.4625 1.54e-13 1ati:B, 1b76:B, 1ggm:A, 1ggm:B
12 8u2p:A 401 356 0.2208 0.2918 0.3287 1.24e-50 8t5n:A
13 8slh:A 362 333 0.2038 0.2983 0.3243 1.29e-42
14 8slh:A 362 66 0.0434 0.0635 0.3485 0.002
15 8sld:A 333 328 0.1906 0.3033 0.3079 4.40e-36
16 8sld:A 333 63 0.0358 0.0571 0.3016 0.35
17 2j3l:B 570 142 0.0679 0.0632 0.2535 0.020 2j3l:A, 2j3m:A, 2j3m:B
18 2j3l:B 570 53 0.0377 0.0351 0.3774 0.13 2j3l:A, 2j3m:A, 2j3m:B
19 8w8j:A 572 37 0.0340 0.0315 0.4865 0.030 8w8j:B, 8w8l:A, 8w8l:B, 8w9i:A, 8w9i:B
20 8w8j:A 572 105 0.0491 0.0455 0.2476 9.7 8w8j:B, 8w8l:A, 8w8l:B, 8w9i:A, 8w9i:B
21 5znj:A 563 37 0.0321 0.0302 0.4595 0.056 5znk:A
22 8udk:B 369 350 0.1358 0.1951 0.2057 0.12
23 2i4n:B 442 67 0.0358 0.0430 0.2836 0.14 2i4m:B, 2i4m:C, 2i4n:A, 2i4n:C, 2i4o:A, 2i4o:B, 2i4o:C
24 2i4n:B 442 36 0.0283 0.0339 0.4167 3.9 2i4m:B, 2i4m:C, 2i4n:A, 2i4n:C, 2i4o:A, 2i4o:B, 2i4o:C
25 3ta0:C 99 52 0.0340 0.1818 0.3462 0.22 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
26 3ta1:D 115 52 0.0340 0.1565 0.3462 0.34 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
27 1nj1:A 463 115 0.0528 0.0605 0.2435 0.96 1nj2:A, 1nj5:A, 1nj6:A
28 1nj1:A 463 60 0.0377 0.0432 0.3333 5.5 1nj2:A, 1nj5:A, 1nj6:A
29 5h3z:B 1113 135 0.0604 0.0288 0.2370 1.5 5h40:A, 5h40:B, 5h41:A, 5h41:B, 5h42:A, 5h42:B
30 1tme:1 256 88 0.0453 0.0938 0.2727 1.7
31 7qu8:A 222 65 0.0340 0.0811 0.2769 2.6 7qu8:B
32 6he3:A 422 101 0.0528 0.0664 0.2772 2.6 6hdz:A, 6hdz:B, 6he1:A, 6he1:B, 6he3:B
33 7okz:AAA 274 21 0.0208 0.0401 0.5238 3.0 4cfs:A, 4cfs:B, 4cfs:C, 4cfs:D, 7ojm:AAA, 7ojm:BBB, 7okz:BBB, 8oro:AAA, 8oro:BBB, 8oxn:AAA, 8oxn:BBB, 8oxn:CCC, 8oxn:DDD, 8oxt:AAA, 8oxt:BBB, 2wj4:A, 2wj4:B, 2wj4:C, 2wj4:D, 2wj6:A, 2wj6:B, 2wj6:C, 2wj6:D, 2wm2:A
34 5gvi:A 326 73 0.0453 0.0736 0.3288 3.0
35 3ex7:C 392 72 0.0358 0.0485 0.2639 4.2 8c6j:7, 3ex7:H, 9fmd:7, 2hyi:C, 2hyi:I, 8i0w:u, 6icz:u, 2j0q:A, 2j0q:B, 2j0s:A, 2j0u:A, 6qdv:7, 2xb2:A, 2xb2:X, 5xjc:u, 5yzg:u, 7znj:A, 7znj:a, 7znj:F, 7znj:f, 7znj:K, 7znj:k
36 7ocn:A 690 90 0.0472 0.0362 0.2778 4.3 7ocn:B, 7ocp:A, 7ocp:B, 7ocq:A, 7ocq:B, 7ocr:A, 7ocr:B, 7ocs:A, 7ocs:B, 7ocs:C, 7ocs:D, 7oct:A, 7oct:B, 7ocu:A, 7ocu:B
37 5zl1:A 306 35 0.0226 0.0392 0.3429 5.4 5zl1:B, 5zl1:C, 5zl1:D
38 8qdx:C 837 101 0.0453 0.0287 0.2376 5.6 9gbv:A, 9gbv:C, 9ggq:C, 9ggq:A, 8qdx:A, 8qqi:A, 8qqi:C, 8qqs:A, 8qqs:C, 8qqu:C, 6rks:C, 6rks:A, 6rku:C, 6rku:A, 6rkv:C, 6rkv:A, 6rkw:C, 6rkw:A, 4tma:E, 2y3p:A, 2y3p:B, 7z9c:A, 7z9c:C, 7z9g:A, 7z9g:C, 7z9k:A, 7z9k:C, 7z9m:A, 7z9m:C
39 4onx:F 129 27 0.0208 0.0853 0.4074 6.7 4onx:A, 4onx:C, 4onx:B, 4onx:D, 4onx:E
40 2vng:B 173 39 0.0226 0.0694 0.3077 9.1 2vng:A, 2vno:A, 2vno:B, 2vnr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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