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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IVDPHDIDPKLVQKLANDALVWCSLRGLLVGDRNSERSGTVPGVDMVHAPVALIPMSFPESHWKQACEVAPIFNELVDRV
SQDGEFLQQSLSRTRKVDPFTSRLLEIHSKMLEINKIEEIRLGLHRSDYMLDEQTKLLLQIELNTISSSFPGLSCLVSEL
HRSLLQQYREDIASDPNRIPANNAVNQFAEALAKAWNEYGDPRAVIMFAVQAEERNMYDQHWLSASLRERHQVTTIRKTL
AEIDALGELQQDGTLVVDGQAVAVIYFRAGYAPSDYNSESEWKARLLMEQSRAVKCPSISYHLAGSKKIQQELAKPNVLE
RFLENKDDIAKLRKCFAGLWSLDESDIVKDAIDRPELYVMKPQNNIYGEDVRDALLKLYILMQRIFPKISHSILMREGIS
HKEQTISELGIYGTYLRNKTEVVINQQAGYLMRTKVSFAVLDSIYLV

The query sequence (length=447) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5oes:E 448 448 0.9955 0.9933 0.9933 0.0 5oes:A, 5oes:B, 5oes:C, 5oes:D, 5oes:F
2 3kal:A 470 467 0.6644 0.6319 0.6360 0.0 3kak:A, 3kal:B
3 3kak:B 437 455 0.6398 0.6545 0.6286 0.0
4 2hgs:A 472 472 0.4183 0.3962 0.3962 4.44e-99
5 1m0w:A 481 445 0.3400 0.3160 0.3416 1.91e-69 1m0w:B
6 2wyo:A 520 479 0.3289 0.2827 0.3069 2.00e-50
7 5oeu:A 460 460 0.3043 0.2957 0.2957 1.21e-48
8 2wyo:C 496 467 0.3199 0.2883 0.3062 1.31e-46 2wyo:B, 2wyo:D
9 5oeu:C 412 447 0.2685 0.2913 0.2685 4.99e-37
10 5oet:B 420 466 0.2550 0.2714 0.2446 7.14e-27
11 1ofh:A 309 129 0.0716 0.1036 0.2481 0.18 1ofh:B, 1ofh:C, 1ofi:A, 1ofi:B, 1ofi:C
12 4w9w:A 306 68 0.0470 0.0686 0.3088 0.19 5i3o:A, 5i3o:B, 5i3r:A, 5i3r:B, 5ikw:A, 4w9x:A
13 2yxl:A 443 167 0.0872 0.0880 0.2335 0.40
14 6rja:C 815 78 0.0515 0.0282 0.2949 2.1 6rja:F, 6rjg:C
15 6rj9:C 836 78 0.0515 0.0275 0.2949 2.1 6rjd:C
16 1im2:A 346 66 0.0447 0.0578 0.3030 2.5 1g3i:T, 1g41:A
17 1g3i:A 326 66 0.0447 0.0613 0.3030 2.5 1g3i:B, 1g3i:C, 1g3i:D, 1g3i:E, 1g3i:F, 1g3i:S, 1g3i:U, 1g3i:V, 1g3i:W, 1g3i:X, 1kyi:A, 1kyi:B, 1kyi:C, 1kyi:D, 1kyi:E, 1kyi:F, 1kyi:S, 1kyi:T, 1kyi:U, 1kyi:V, 1kyi:W, 1kyi:X
18 4ouj:A 281 47 0.0291 0.0463 0.2766 4.0 4ouj:B
19 1d0k:A 314 30 0.0268 0.0382 0.4000 8.2 1d0l:A, 1d0m:A, 1qdt:A
20 6m0w:A 1032 64 0.0403 0.0174 0.2812 8.3 6m0v:A, 6m0x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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