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BioLiP
>protein
ITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRIIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQ
FKQ

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b93:R 96 83 1.0000 0.8646 1.0000 1.53e-58 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
2 8q0a:R 96 83 0.8313 0.7188 0.8313 4.07e-50 7dgq:I, 7dgr:I, 7dgs:I, 7dgz:I, 7dh0:I, 7dkf:I2, 5lnk:b, 5o31:R, 8q0f:R, 8q0j:R, 8q0m:R, 8q0o:R, 8q0q:R, 8q1p:R, 8q1u:R, 8q1y:R, 8q25:R, 8q45:R, 8q46:R, 8q47:R, 8q48:R, 8q49:R, 8q4a:R, 6q9d:S6, 6qa9:S6, 6qbx:S6, 6qc2:S6, 6qc3:S6, 6qc4:S6, 6qc5:S6, 6qc6:S6, 6qc7:S6, 6qc8:S6, 7qsd:R, 7qsk:R, 7qsl:R, 7qsm:R, 7qsn:R, 7qso:R, 7r41:R, 7r42:R, 7r43:R, 7r44:R, 7r45:R, 7r46:R, 7r47:R, 7r48:R, 7r4c:R, 7r4d:R, 7r4f:R, 7r4g:R, 8ud1:1R, 8ueo:1R, 8uep:1R, 8ueq:1R, 8uer:1R, 8ues:1R, 8uet:1R, 8ueu:1R, 8uev:1R, 8uew:1R, 8uex:1R, 8uey:1R, 8uez:1R, 8ugh:1R, 8ugi:1R, 8ugj:1R, 8ugn:1R, 8ugn:5R, 8ugr:1R, 8ugr:5R, 7v2c:T, 7v2d:T, 7v2e:T, 7v2f:T, 7v2h:T, 7v2k:T, 7v2r:T, 7v30:T, 7v31:T, 7v32:T, 7v33:T, 7v3m:T, 7vb7:T, 7vbn:T, 7vbz:T, 7vwj:T, 7vxp:T, 7vxu:T, 7vy8:T, 7vya:T, 7vyf:T, 7vyh:T, 7vyn:T, 7vz1:T, 7vzv:T, 7vzw:T, 7w00:T, 7w0h:T, 7w0r:T, 7w0y:T, 7w1o:T, 7w1p:T, 7w1t:T, 7w1u:T, 7w1v:T, 7w1z:T, 7w20:T, 7w2k:T, 7w2l:T, 7w2r:T, 7w2u:T, 7w2y:T, 7w31:T, 7w32:T, 7w35:T, 7w4c:T, 7w4d:T, 7w4e:T, 7w4f:T, 7w4g:T, 7w4j:T, 7w4k:T, 7w4l:T, 7w4m:T, 7w4n:T, 7w4q:T, 7zd6:b, 7zdh:b, 7zdj:b, 7zdm:b, 7zdp:b, 7zeb:b, 6zk9:b, 6zkc:b, 6zkd:b, 6zke:b, 6zkf:b, 6zkg:b, 6zkh:b, 6zki:b, 6zkj:b, 6zkk:b, 6zkl:b, 6zkm:b, 6zkn:b, 6zko:b, 6zkp:b, 6zkq:b, 6zkr:b, 6zks:b, 6zkt:b, 6zku:b, 6zkv:b
3 8esw:S6 90 81 0.5663 0.5222 0.5802 7.11e-30 8b9z:R, 8ba0:R, 8esz:S6
4 5lc5:R 89 35 0.3976 0.3708 0.9429 2.95e-19 5ldw:R, 5ldx:R
5 7zm7:M 118 52 0.3855 0.2712 0.6154 2.94e-10 7zmb:M, 7zmg:M
6 7b0n:R 118 74 0.3735 0.2627 0.4189 4.06e-10 6gcs:M, 7o6y:M, 7o71:M, 6rfr:M, 6rfs:M, 6y79:M, 6yj4:R
7 8bed:R 73 65 0.3133 0.3562 0.4000 1.99e-07 7a23:P, 7a24:P, 7aqr:R, 7ar7:R, 7ar8:R, 7arb:R, 8bpx:R, 8bq5:R, 8bq6:R, 8e73:S6, 6x89:S6
8 8gym:s6 92 57 0.3012 0.2717 0.4386 3.06e-07 8b6f:BR, 8bqs:BR, 8gym:S6, 7tgh:S6
9 8qby:R 59 49 0.2048 0.2881 0.3469 5.95e-05
10 2ib8:D 393 36 0.1566 0.0331 0.3611 0.054 2f2s:A, 2f2s:B, 2f2s:C, 2f2s:D, 2ib8:A, 2ib8:B, 2ib8:C, 2ib9:A, 2ib9:B, 2ib9:C, 2ib9:D, 2ibu:A, 2ibu:B, 2ibu:C, 2ibu:D, 2ibw:A, 2ibw:B, 2ibw:C, 2ibw:D, 2iby:A, 2iby:B, 2iby:C, 2iby:D
11 7cw5:B 394 36 0.1566 0.0330 0.3611 0.26 7cw5:A
12 4ubt:A 396 36 0.1687 0.0354 0.3889 0.28 4ubt:B, 4ubt:C, 4ubt:D, 4ubu:A, 4ubu:B, 4ubu:C, 4ubu:D, 4ubu:E, 4ubu:F, 4ubu:G, 4ubu:H, 4ubv:A, 4ubv:B
13 7aoi:A1 217 32 0.1446 0.0553 0.3750 1.2 6hiv:A1, 6hix:A1, 6yxx:A1, 6yxy:A1
14 6aqp:C 399 36 0.1325 0.0276 0.3056 2.1 6aqp:A, 6aqp:B, 6aqp:D, 6are:A, 6are:B, 6are:C, 6are:D
15 4c2j:D 395 36 0.1687 0.0354 0.3889 2.1 4c2j:A, 4c2j:B, 4c2j:C
16 6bn2:A 393 36 0.1446 0.0305 0.3333 2.2
17 3tlx:D 182 21 0.1205 0.0549 0.4762 3.0
18 3tlx:B 240 21 0.1205 0.0417 0.4762 3.7 3tlx:A
19 8gqm:A 377 36 0.1807 0.0398 0.4167 3.9
20 5bz4:K 400 39 0.1687 0.0350 0.3590 5.1 5bz4:B, 5bz4:D, 5bz4:F, 5bz4:H
21 8gqn:A 390 36 0.1446 0.0308 0.3333 5.2 8gqn:B, 8gqn:C, 8gqn:D
22 6bja:A 382 36 0.1446 0.0314 0.3333 7.5
23 3kdo:C 440 23 0.1446 0.0273 0.5217 8.8 3a12:A, 3a12:B, 3a12:C, 3a12:D, 3a12:E, 3a12:F, 3a12:G, 3a12:H, 3a12:I, 3a12:J, 3a13:A, 3a13:B, 3a13:C, 3a13:D, 3a13:E, 3a13:F, 3a13:G, 3a13:H, 3a13:I, 3a13:J, 3kdn:A, 3kdn:H, 3kdn:B, 3kdn:G, 3kdn:C, 3kdn:F, 3kdn:D, 3kdn:J, 3kdn:E, 3kdn:I, 3kdo:A, 3kdo:H, 3kdo:B, 3kdo:G, 3kdo:F, 3kdo:D, 3kdo:J, 3kdo:E, 3kdo:I, 3wqp:A, 3wqp:B, 3wqp:C, 3wqp:D, 3wqp:E, 3wqp:F, 3wqp:G, 3wqp:H, 3wqp:I, 3wqp:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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