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BioLiP
>protein
ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE
GFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFAAPLQHADQAVVVTANDFDSIYAM
NRIIAAVQAKSKNYKVRLAGCVANRSRATDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMDEDQDVLAARAEYI
RLAESLWRGLDPIDPHSLPDREIFELLG

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fwy:A 268 266 0.9888 0.9888 0.9962 0.0 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
2 2ynm:B 268 267 0.7090 0.7090 0.7116 5.22e-144 2ynm:A
3 1cp2:A 269 227 0.3209 0.3197 0.3789 1.52e-49 1cp2:B
4 6nzj:A 273 269 0.3694 0.3626 0.3680 3.08e-48 6nzj:B
5 8q5x:A 280 268 0.3657 0.3500 0.3657 3.67e-46 8q5x:C, 8q5x:B, 8q5x:D
6 2afh:E 289 268 0.3619 0.3356 0.3619 1.08e-44 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
7 8q5t:A 280 272 0.3619 0.3464 0.3566 4.08e-44 8q50:A, 8q5t:B, 8q5t:C, 8q5t:D, 8q5v:A, 8q5v:B, 8q5v:C, 8q5v:D, 8q5v:E, 8q5v:F, 8q5v:G, 8q5v:H, 8q5v:J, 8q5v:K, 8q5v:L, 8q5v:M
8 7qqa:A 273 259 0.3396 0.3333 0.3514 2.64e-42 7qqa:B, 7qqa:C, 7qqa:D
9 8q5w:G 281 272 0.3619 0.3452 0.3566 4.19e-41 8q5w:A, 8q5w:B, 8q5w:C, 8q5w:D, 8q5w:E, 8q5w:F, 8q5w:H, 8q5w:I, 8q5w:J, 8q5w:K, 8q5w:L
10 8oie:D 272 264 0.3321 0.3272 0.3371 1.41e-39 8oie:E, 8oie:I, 8oie:J
11 2bej:A 245 39 0.0746 0.0816 0.5128 2.95e-05 2bek:A, 2bek:B, 2bek:C, 2bek:D
12 4v02:A 244 182 0.1791 0.1967 0.2637 1.16e-04 4v02:B, 4v03:A, 4v03:B
13 6iub:A 264 39 0.0634 0.0644 0.4359 6.91e-04 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
14 5if9:A 251 47 0.0746 0.0797 0.4255 0.003 5if9:B, 5ihp:A, 5ihp:B
15 3cwq:A 206 80 0.1007 0.1311 0.3375 0.004 3cwq:B
16 1ion:A 243 33 0.0597 0.0658 0.4848 0.009
17 5zme:A 638 80 0.0821 0.0345 0.2750 0.025 5zmf:A
18 5k5z:D 314 45 0.0672 0.0573 0.4000 0.027 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
19 1g3q:A 237 39 0.0634 0.0717 0.4359 0.028 1g3r:A
20 4rz3:A 244 26 0.0597 0.0656 0.6154 0.16 4rz3:B
21 8fbm:A 426 116 0.1157 0.0728 0.2672 0.37 8fbm:B, 8fbt:B, 8fbt:A, 8fbu:A, 8fbu:B
22 1ii0:B 553 35 0.0522 0.0253 0.4000 0.38 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
23 3kb1:A 243 33 0.0485 0.0535 0.3939 0.68 3kb1:B, 6oby:A, 6oby:B
24 8c00:t 619 39 0.0522 0.0226 0.3590 0.91 8c01:t, 6rbd:k, 7wtr:CC
25 6vlz:v 712 88 0.0896 0.0337 0.2727 1.3 7a5k:r1, 6vmi:v, 6ydp:BC, 6ydw:BC
26 3la6:B 260 40 0.0597 0.0615 0.4000 1.4 3la6:A, 3la6:C, 3la6:D, 3la6:E, 3la6:F, 3la6:G, 3la6:H, 3la6:I, 3la6:J, 3la6:K, 3la6:L, 3la6:M, 3la6:N, 3la6:O, 3la6:P
27 6riq:C 254 172 0.1493 0.1575 0.2326 1.8 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
28 5aup:I 241 215 0.2015 0.2241 0.2512 2.7 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
29 1h65:A 257 30 0.0560 0.0584 0.5000 3.2 3bb1:A, 3bb1:B, 3bb1:C, 3bb1:D, 3bb1:E, 3bb1:F, 3bb1:G, 3bb1:H, 1h65:B, 1h65:C
30 6sc2:B 3930 46 0.0634 0.0043 0.3696 3.6 6rla:A, 6rla:B, 6sc2:A
31 7dut:A 220 44 0.0672 0.0818 0.4091 3.6 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
32 4rh7:A 3005 46 0.0634 0.0057 0.3696 3.9
33 3q9l:A 257 33 0.0410 0.0428 0.3333 4.1 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
34 7q41:A 369 42 0.0560 0.0407 0.3571 4.5 7q41:C, 7q41:E, 7q42:C, 7q42:A, 7q42:E, 7q43:A, 7q43:C, 7q43:E, 7q44:C, 7q44:A, 7q44:E, 7q45:A, 7q45:C, 7q45:E, 7q46:C, 7q46:E, 7q46:A
35 8bx8:C 3947 49 0.0709 0.0048 0.3878 4.8 7k58:C, 7k5b:C, 7kek:C
36 6w2s:5 324 27 0.0410 0.0340 0.4074 6.0 8pj5:8, 8rg0:8
37 6kgy:B 441 24 0.0410 0.0249 0.4583 6.1 6kgy:A, 6kgy:C, 6kgy:D, 6kod:A, 6kod:B, 6kod:C, 6kod:D, 6kyy:A, 6kyy:B, 6kyy:C, 6kyy:D
38 4iok:A 557 35 0.0560 0.0269 0.4286 7.3 1fp7:A, 1fpm:A, 1fpm:B, 4iok:B, 4iol:A, 4iol:B, 4jjz:A, 4jjz:B, 4jki:A, 3qus:A, 3qus:B
39 6g2g:B 273 56 0.0634 0.0623 0.3036 8.0 6g2g:A
40 5w7b:C 413 41 0.0448 0.0291 0.2927 8.9 5w7a:B, 5w7b:D
41 7oa5:B 186 21 0.0485 0.0699 0.6190 9.2 7oa5:A, 7oa5:E, 7oa5:H, 7oa5:C, 7oa5:G, 7oa5:D, 7oa5:F
42 7xt2:B 388 52 0.0522 0.0361 0.2692 9.6 7xt2:A
43 6bs3:A 330 44 0.0522 0.0424 0.3182 10.0 6bs4:A, 6bs5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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