Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNY

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3abk:M 43 40 1.0000 0.9302 1.0000 2.59e-24 3abk:Z, 3abl:M, 3abl:Z, 3abm:M, 3abm:Z, 3ag1:M, 3ag1:Z, 3ag2:M, 3ag2:Z, 3ag3:M, 3ag3:Z, 3ag4:M, 3ag4:Z, 3asn:M, 3asn:Z, 3aso:M, 3aso:Z, 5b1a:M, 5b1a:Z, 5b1b:M, 5b1b:Z, 5b3s:M, 5b3s:Z, 7coh:M, 7coh:Z, 7cp5:M, 7cp5:Z, 7d5w:M, 7d5w:Z, 7d5x:M, 7d5x:Z, 2dyr:M, 2dyr:Z, 2dys:M, 2dys:Z, 2eij:M, 2eij:Z, 2eik:M, 2eik:Z, 2eil:M, 2eil:Z, 2eim:M, 2eim:Z, 2ein:M, 2ein:Z, 7ev7:M, 7ev7:Z, 8gbt:M, 8gbt:Z, 8gcq:M, 8gcq:Z, 8gvm:M, 8gvm:Z, 8h8r:M, 8h8r:Z, 8h8s:M, 8h8s:Z, 8ijn:M, 8ijn:Z, 5iy5:M, 5iy5:Z, 6j8m:M, 6j8m:Z, 6juw:M, 6juw:Z, 6jy3:M, 6jy4:M, 6nkn:M, 6nkn:Z, 6nmf:M, 6nmf:Z, 6nmp:M, 6nmp:Z, 7thu:M, 7thu:Z, 7tie:M, 7tie:Z, 7tih:M, 7tih:Z, 7tii:M, 7tii:Z, 1v54:M, 1v54:Z, 1v55:M, 1v55:Z, 7vuw:M, 7vuw:Z, 7vvr:M, 7vvr:Z, 7w3e:M, 7w3e:Z, 5w97:M, 5w97:m, 5wau:M, 5wau:m, 3wg7:M, 3wg7:Z, 5x19:M, 5x19:Z, 5x1b:M, 5x1b:Z, 5x1f:M, 5x1f:Z, 3x2q:M, 3x2q:Z, 5xdq:M, 5xdq:Z, 5xdx:M, 5xdx:Z, 7xma:M, 7xma:Z, 7xmb:M, 7xmb:Z, 7y44:M, 7y44:Z, 2y69:M, 2y69:Z, 7ypy:M, 7ypy:Z, 5z84:M, 5z84:Z, 5z85:M, 5z85:Z, 5z86:M, 5z86:Z, 5zco:M, 5zco:Z, 5zcp:M, 5zcp:Z, 5zcq:M, 5zcq:Z, 2zxw:M, 2zxw:Z
2 9bha:A 793 35 0.3250 0.0164 0.3714 1.0 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A
3 6fmr:A 475 29 0.3500 0.0295 0.4828 1.0 4d2b:A, 4d2d:A, 5d58:A, 5d59:A, 6eia:A, 6fmy:A, 6ghj:A, 5oxl:A, 5oxm:A, 5oxn:A, 5oxo:A, 5oxq:A, 4xnj:A, 6yof:A, 6yog:A
4 9asj:A 741 35 0.3250 0.0175 0.3714 1.1 9asj:B, 9bp9:A, 9bp9:C, 9bpa:A, 9bpa:C, 9bpa:E, 9bpa:G
5 5oxp:A 462 25 0.3250 0.0281 0.5200 2.4 7ac6:A, 4d2c:A, 5d6k:A, 5oxk:A, 4xni:A
6 1lld:A 313 29 0.2250 0.0288 0.3103 5.2 1lld:B, 1lth:T, 1lth:R
7 6rm3:SGG 330 29 0.2500 0.0303 0.3448 5.4
8 6rx4:B 379 20 0.2250 0.0237 0.4500 6.7 6rko:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218