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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ISDARANNAKTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRRVNGKVFALKDQCLHRGVRLSEKP
TCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPE
RSEQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHILVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVED
DDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENWPEEHVVQYEWYVPITDDTHEYWEILVRV
CPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVATDISPITWRKLASRWNRGIAKPGRGV
AGAVKDTSLIFKQTADGKRPGYKVEQI

The query sequence (length=427) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1z01:A 427 427 1.0000 1.0000 1.0000 0.0 1z01:B, 1z01:C, 1z01:D, 1z01:E, 1z01:F, 1z02:A, 1z02:B, 1z02:C, 1z02:D, 1z02:E, 1z02:F, 1z03:A, 1z03:B, 1z03:C, 1z03:D, 1z03:E, 1z03:F
2 2de6:B 390 391 0.3794 0.4154 0.4143 9.31e-96 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A
3 3gkq:A 374 389 0.3513 0.4011 0.3856 1.02e-89 3gkq:B, 3gkq:C, 3gkq:D, 3gkq:E, 3gkq:F
4 3gcf:A 367 391 0.3489 0.4060 0.3811 1.41e-89 3gcf:B, 3gcf:C, 3gcf:D, 3gcf:E, 3gcf:F, 3gcf:G, 3gcf:H, 3gcf:I, 3gcf:J, 3gcf:K, 3gcf:L, 3gcf:M, 3gcf:N, 3gcf:O
5 6icl:A 338 103 0.0703 0.0888 0.2913 1.01e-07
6 7sze:B 329 127 0.0867 0.1125 0.2913 6.61e-07 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
7 6wn3:B 328 127 0.0843 0.1098 0.2835 1.06e-06 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
8 5bok:A 102 99 0.0726 0.3039 0.3131 1.23e-05
9 7yls:B 436 180 0.1054 0.1032 0.2500 8.94e-05 8h2t:B, 8h2t:D, 8h2t:G
10 2qpz:A 103 98 0.0632 0.2621 0.2755 2.00e-04
11 7v28:B 425 126 0.0679 0.0682 0.2302 3.34e-04 7fjl:A, 7fjl:B, 7fjl:C, 7fjl:D, 7fjl:E, 7fjl:F, 7v25:B, 7v25:A, 7v25:C, 7v25:D, 7v25:E, 7v25:F, 7v28:A, 7v28:C, 7v28:D, 7v28:E, 7v28:F
12 7fhr:A 437 188 0.1054 0.1030 0.2394 4.64e-04
13 6icn:A 344 112 0.0585 0.0727 0.2232 5.36e-04 6ick:A, 6ick:B, 6ick:C, 6icm:A, 6icm:B, 6icm:C, 6icn:B, 6icn:C, 6ico:A, 6ico:B, 6ico:C, 6icp:A, 6icp:B, 6icp:C, 6icq:A, 6icq:B, 6icq:C
14 1uli:C 425 55 0.0468 0.0471 0.3636 5.40e-04 1uli:A, 1uli:E, 1ulj:A, 1ulj:C, 1ulj:E
15 5aeu:A 433 55 0.0398 0.0393 0.3091 0.008 5aeu:C, 5aeu:E, 5aeu:G, 5aew:A, 5aew:C, 5aew:E, 5aew:G, 5aew:I, 5aew:K, 5aew:M, 5aew:O, 5aew:Q, 5aew:S, 5aew:U, 5aew:W, 2xr8:A, 2xr8:C, 2xr8:E, 2xr8:G, 2xr8:I, 2xr8:K, 2xr8:M, 2xr8:O, 2xr8:Q, 2xr8:S, 2xr8:U, 2xr8:W, 2xrx:A, 2xrx:C, 2xrx:E, 2xrx:G, 2xrx:I, 2xrx:K, 2xrx:M, 2xrx:O, 2xrx:Q, 2xrx:S, 2xrx:U, 2xrx:W, 2xsh:A, 2xsh:C, 2xsh:E, 2xsh:G, 2xsh:I, 2xsh:K, 2xso:A, 2xso:C, 2xso:E, 2xso:G, 2xso:I, 2xso:K, 2xso:M, 2xso:O, 2xso:Q, 2xso:S, 2xso:U, 2xso:W, 2yfi:A, 2yfi:C, 2yfi:E, 2yfi:G, 2yfi:I, 2yfi:K, 2yfj:A, 2yfj:C, 2yfj:E, 2yfj:G, 2yfj:I, 2yfj:K, 2yfl:A, 2yfl:C, 2yfl:E, 2yfl:G, 2yfl:I, 2yfl:K
16 7qwt:A 352 126 0.0749 0.0909 0.2540 0.009 7qwt:B, 7qwt:C, 7qwt:D, 7qwt:E, 7qwt:F, 7qwt:G, 7qwt:H, 7qwt:I
17 3en1:A 424 55 0.0398 0.0401 0.3091 0.013 3eqq:A
18 1wql:A 436 55 0.0422 0.0413 0.3273 0.013
19 3gzx:A 440 55 0.0398 0.0386 0.3091 0.041 3gzy:A
20 4nbb:E 114 75 0.0445 0.1667 0.2533 0.076 7buh:A, 7bui:D, 7bui:E, 2de5:D, 2de5:E, 2de5:F, 2de6:D, 2de6:E, 2de6:F, 2de7:D, 2de7:E, 2de7:F, 6llf:D, 6llf:E, 6llf:F, 6llh:D, 6llh:E, 6llh:F, 4nb8:D, 4nb8:E, 4nb8:F, 4nb9:D, 4nb9:E, 4nb9:F, 4nba:D, 4nba:E, 4nba:F, 4nbb:D, 4nbb:F, 4nbc:D, 4nbc:E, 4nbc:F, 4nbd:D, 4nbd:E, 4nbe:D, 4nbe:E, 4nbf:D, 4nbf:E, 4nbf:F, 4nbg:D, 4nbg:E, 4nbg:F, 4nbh:D, 4nbh:E, 4nbh:F, 1vck:A, 3vmg:D, 3vmg:E, 3vmg:F, 3vmh:D, 3vmh:E, 3vmh:F, 3vmi:D, 3vmi:E, 3vmi:F
21 6y8j:A 343 179 0.0984 0.1224 0.2346 0.084
22 7q05:E 409 121 0.0703 0.0733 0.2479 0.11 7q04:D, 7q04:E, 7q04:F, 7q05:D, 7q05:F, 7q06:D, 7q06:E, 7q06:F, 7vju:A, 7vju:C, 7vju:E
23 4qur:A 415 97 0.0585 0.0602 0.2577 0.17 5hl4:A, 4qup:A, 4quq:A, 3vca:A, 3vcp:A
24 2i7f:A 102 50 0.0351 0.1471 0.3000 0.21 2i7f:B
25 1jm1:A 202 56 0.0398 0.0842 0.3036 0.53
26 1fqt:A 109 69 0.0398 0.1560 0.2464 0.57 1fqt:B
27 3dqy:A 106 58 0.0398 0.1604 0.2931 0.69 4emj:B
28 6y9c:A 365 162 0.0913 0.1068 0.2407 0.92 6y8s:A, 6y9d:A, 6y9d:B, 6y9d:C, 6y9d:D, 6y9d:E, 6y9d:F, 6y9d:G, 6y9d:H, 6y9d:I, 6y9d:J, 6y9d:K, 6y9d:L, 6zgp:A, 6zgp:B, 6zgp:C, 6zgp:D, 6zgp:E, 6zgp:F, 6zgp:G, 6zgp:H, 6zgp:I, 6zgp:J, 6zgp:K, 6zgp:L
29 2e4p:A 108 52 0.0398 0.1574 0.3269 1.0 2e4p:B, 2e4q:A, 2e4q:C, 2yvj:B
30 3m1r:D 321 64 0.0398 0.0530 0.2656 1.1 3m1r:A, 3m1r:B, 3m1r:C, 3m1r:E, 3m1r:F
31 7sqc:1C 1700 103 0.0656 0.0165 0.2718 1.4 7sqc:1D
32 7qh2:C 467 26 0.0258 0.0236 0.4231 2.5 7qh2:F
33 3d89:A 136 95 0.0632 0.1985 0.2842 3.1
34 4hnx:A 713 58 0.0328 0.0196 0.2414 6.7
35 3fu7:A 559 65 0.0492 0.0376 0.3231 6.7 3dkh:A, 3dkh:B, 3fu7:B, 3fu8:A, 3fu8:B, 3fu9:A, 3fu9:B, 1gw0:A, 1gw0:B, 2ih8:A, 2ih8:B, 2ih9:A, 2ih9:B, 2q9o:A, 2q9o:B, 3qpk:A, 3qpk:B
36 4z87:A 498 69 0.0492 0.0422 0.3043 8.8 5tc3:A, 5tc3:B, 4z87:B, 4z87:C, 4z87:D
37 5mcp:C 446 69 0.0492 0.0471 0.3043 9.2 5mcp:A, 5mcp:B, 5mcp:D, 6rpu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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