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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ISACPKCGMTFQQFRKIGRFGCSECYKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEE
FENAAHVRDQIRLLEQSLK

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wtc:B 100 99 1.0000 0.9900 1.0000 4.37e-71 8wtb:B, 8wtb:D, 8wtc:D
2 8gqd:E 59 49 0.2222 0.3729 0.4490 5.20e-12
3 5fks:A 731 35 0.1414 0.0192 0.4000 0.34
4 7odf:A 703 32 0.1010 0.0142 0.3125 0.41
5 5b4x:B 479 59 0.1919 0.0397 0.3220 0.55 3a7q:B, 5b4x:D, 5b4y:B
6 4ayg:A 1028 46 0.1515 0.0146 0.3261 1.2 4ayg:B, 3hz3:A, 3klk:A, 3kll:A
7 8uw3:A 1265 51 0.1818 0.0142 0.3529 2.1 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B
8 8av6:J 647 38 0.1414 0.0216 0.3684 2.5 8oo7:J, 8oop:J
9 7drc:C 906 41 0.1515 0.0166 0.3659 2.6 7drb:C, 7drb:D, 7w3v:C, 7w3x:C
10 7rbx:C 425 39 0.1313 0.0306 0.3333 3.1 7rbx:A, 7rbx:B, 7rbx:D
11 6lt4:A 623 39 0.1212 0.0193 0.3077 3.9 6lt4:B, 6lt4:C, 6lt4:D, 6lt4:E, 6lt4:F, 6lt4:G, 6lt4:H, 6lt4:I, 6lt4:J, 6lt4:K, 6lt4:L, 6lt4:M, 6lt4:N
12 2i13:A 151 60 0.1616 0.1060 0.2667 5.0
13 5z8l:A 204 22 0.1010 0.0490 0.4545 6.3 5z8n:A, 5z8n:B, 5z8n:C
14 3u44:A 1122 21 0.0909 0.0080 0.4286 7.0 3u4q:A
15 4cej:A 1177 21 0.0909 0.0076 0.4286 7.6 4ceh:A, 4cei:A
16 6ra9:B 458 49 0.1414 0.0306 0.2857 7.9 8b6z:A, 4c0s:A, 4c0s:B, 8g5z:EF, 8g60:EF, 8g6j:EF, 5lzs:jj, 6ra9:A, 6zmo:CD
17 9asj:A 741 33 0.1212 0.0162 0.3636 8.1 9asj:B, 9bp9:A, 9bp9:C, 9bpa:A, 9bpa:C, 9bpa:E, 9bpa:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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