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BioLiP
>protein
ISAADIEGAIEDYVSSFSADTEREEIGTVIDVEGLPSVLEFPGGVLLDEHSVEGQQVKRTG

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nkl:A 61 61 1.0000 1.0000 1.0000 5.73e-38
2 7njn:C 536 90 1.0000 0.1138 0.6778 2.21e-24 6foc:A, 6foc:B, 6foc:C, 8g08:B, 8g08:C, 8g08:A, 8g09:A, 8g09:B, 8g09:C, 8g0a:A, 8g0a:B, 8g0a:C, 8g0c:B, 8g0c:C, 8g0c:A, 8g0d:C, 8g0d:A, 8g0d:B, 8g0e:A, 8g0e:B, 8g0e:C, 7jg5:A, 7jg5:B, 7jg5:C, 7jga:A, 7jga:B, 7jga:C, 7njk:A, 7njk:B, 7njk:C, 7njl:A, 7njl:B, 7njl:C, 7njm:A, 7njm:B, 7njm:C, 7njn:A, 7njn:B, 7njo:A, 7njo:B, 7njo:C, 7njp:A, 7njp:B, 7njp:C, 7njq:A, 7njq:B, 7njq:C, 7njr:A, 7njr:B, 7njr:C, 7njs:A, 7njs:B, 7njs:C, 7nk7:A, 7nk7:B, 7nk7:C, 7nkh:A, 7nkh:B, 7nkh:C, 7nkj:A, 7nkj:B, 7nkj:C, 7y5a:A, 7y5a:B, 7y5a:C, 7y5b:A, 7y5b:B, 7y5b:C, 7y5c:A, 7y5c:B, 7y5c:C
3 8j0t:C 534 90 0.8033 0.0918 0.5444 9.53e-16 8j0s:A, 8j0s:B, 8j0s:C, 8j0t:A, 8j0t:B, 8jr0:A, 8jr0:B, 8jr0:C
4 7nkd:B 47 61 0.6721 0.8723 0.6721 1.02e-12
5 7nkl:B 38 55 0.5902 0.9474 0.6545 9.46e-11
6 5dn6:A 505 90 0.4590 0.0554 0.3111 0.012 5dn6:B, 5dn6:C
7 7a9g:AAA 549 22 0.1803 0.0200 0.5000 0.44 7a9g:BBB, 7a9h:AAA, 7a9h:BBB, 8ogh:A, 8ogh:B
8 8bja:A 1563 47 0.2459 0.0096 0.3191 0.61
9 7yeh:A 1020 38 0.1803 0.0108 0.2895 1.2 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D
10 6n2y:A 500 90 0.4098 0.0500 0.2778 1.3 8hh1:A, 8hh1:B, 8hh1:C, 8hh2:A, 8hh2:B, 8hh2:C, 8hh3:A, 8hh3:B, 8hh3:C, 8hh4:A, 8hh4:B, 8hh4:C, 8hh5:A, 8hh5:B, 8hh5:C, 8hh6:A, 8hh6:B, 8hh6:C, 8hh7:A, 8hh7:B, 8hh7:C, 8hh8:A, 8hh8:B, 8hh8:C, 8hh9:A, 8hh9:B, 8hh9:C, 8hha:A, 8hha:B, 8hha:C, 8hhb:A, 8hhb:B, 8hhb:C, 8hhc:A, 8hhc:B, 8hhc:C, 7l1q:A, 7l1q:B, 7l1q:C, 7l1r:A, 7l1r:B, 7l1r:C, 7l1s:A, 7l1s:B, 7l1s:C, 6n2y:B, 6n2y:C, 6n2z:B, 6n2z:C, 6n2z:A, 6n30:C, 6n30:A, 6n30:B, 8spw:A, 8spw:B, 8spw:C, 8spx:A, 8spx:B, 8spx:C, 8u1h:A, 8u1h:B, 8u1h:C, 7xkq:A, 7xkq:B, 7xkq:C, 7xkr:A, 7xkr:B, 7xkr:C
11 8bj3:A 360 27 0.1967 0.0333 0.4444 1.5 8bj3:B
12 6f89:A 344 22 0.1967 0.0349 0.5455 3.1 6f87:A, 6f87:B, 6f87:C, 6f87:D, 6f89:B, 6f8y:A, 6f8y:B, 6f8y:C, 6f8y:D
13 1blx:A 305 46 0.2131 0.0426 0.2826 3.7 2euf:B, 2f2c:B, 1xo2:B
14 6oqo:A 269 46 0.2131 0.0483 0.2826 4.0 4aua:A, 4ez5:A, 8i0m:A, 5l2i:A, 5l2s:A, 5l2t:A, 3nup:A, 3nux:A, 6oql:A, 4tth:B
15 8pme:C 343 21 0.1803 0.0321 0.5238 4.0 8pme:B
16 8pmi:B 409 21 0.1803 0.0269 0.5238 4.5 8has:A, 8has:B, 8has:C, 8has:D, 8has:E, 8has:F, 8hau:A, 8hau:B, 8hau:C, 8hau:D, 8hau:E, 8hau:F, 8pme:A, 8pmg:A, 8pmg:B, 8pmg:C, 8pmg:D, 8pmg:E, 8pmg:F, 8pmi:A, 8pmi:C, 8pmi:D, 8pmi:E, 8pmi:F, 8pml:A, 8pml:B, 8pml:C, 8pml:D, 8pml:E, 8pml:F, 8pmm:A, 8pmm:B, 8pmm:C, 8pn1:A, 8pn1:B, 8pn1:C, 8pn1:D, 8pn1:E, 8pn1:F, 8pn2:A, 8pn2:B, 8pn2:C, 8pn2:D, 8pn2:E, 8pn2:F, 7y77:A, 7y77:B, 7y77:C
17 8jqo:A 391 27 0.1803 0.0281 0.4074 5.1 8jqo:B, 8jqo:C, 8jqp:A, 8jqp:B, 8jqq:A, 8jqq:B
18 6ywe:C 307 31 0.1803 0.0358 0.3548 5.5 6yws:C, 6ywv:C, 6ywx:C, 6ywy:C
19 3qp5:A 251 19 0.1311 0.0319 0.4211 6.1 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
20 2v55:D 182 31 0.1803 0.0604 0.3548 6.3 1gwn:A, 1gwn:C, 1m7b:A, 2v55:B
21 6sdw:A 177 36 0.2131 0.0734 0.3611 9.2 6htu:A, 6htu:B, 6htu:C, 6sdy:A
22 3gc0:A 278 27 0.1475 0.0324 0.3333 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218