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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IRWLAAPTSWSWVEQANAHPMEVLIDHAHCERKAAGAAVQMMFRYLCEPGLGEALSPLAREELEHFEQVLALIKARGRYL
EPLPSPGYGADLARQIRKGEPQRMLDSFLVAGLIEARSHERMALLAEHSPDPQLRELYSDLLASEARHFGLYWVLCEQRY
PRELIVERLEVLALAEVKALEGALTRPEDVRMHSCGVDVTQ

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ux1:C 202 200 0.9950 0.9901 1.0000 1.27e-145 5ux1:A, 5ux1:B, 5ux1:D
2 8fhb:A 204 199 0.7264 0.7157 0.7337 1.26e-99
3 8fhc:B 215 198 0.3980 0.3721 0.4040 1.67e-34 8fhc:A
4 6zmb:C 200 192 0.3731 0.3750 0.3906 1.53e-33 8afj:B, 8afj:A, 2itb:A, 2itb:B, 6zma:B, 6zma:C, 6zmb:B, 6zmc:B, 6zmc:C
5 6cfw:J 143 50 0.0896 0.1259 0.3600 0.29
6 6u8y:J 177 51 0.0746 0.0847 0.2941 0.47 6u8y:j
7 1og6:C 298 162 0.1990 0.1342 0.2469 1.3 1og6:A, 1og6:B
8 5gsn:A 445 81 0.1095 0.0494 0.2716 1.4 5gsn:B, 5gsn:C, 5gsn:D, 5ipy:A, 5ipy:B, 5iq1:A, 5iq1:B, 5iq4:A, 5iq4:B
9 5z5c:B 336 34 0.0597 0.0357 0.3529 3.1 5b53:A, 5b55:A, 5b55:B, 5z5c:A, 5z5c:C, 5z5c:D
10 7twz:A 298 85 0.1095 0.0738 0.2588 5.4 7twz:B, 7twz:C, 7twz:D, 7twz:E, 7twz:F
11 4mz0:A 896 120 0.1443 0.0324 0.2417 5.6
12 2ply:A 212 84 0.1294 0.1226 0.3095 6.7 2ply:B, 2uwm:A, 2uwm:B, 1wsu:A, 1wsu:B, 1wsu:C
13 6v85:A 1901 57 0.0846 0.0089 0.2982 6.8 6v86:A
14 3hrr:A 317 62 0.0945 0.0599 0.3065 9.6 3hrr:B, 5kbz:A, 5kbz:B
15 9boh:A 402 80 0.1244 0.0622 0.3125 9.9 9boh:B, 9bow:A, 9bow:B, 9bpe:A, 9bpe:B, 2dkj:A, 2dkj:B, 8ssy:A, 8ssy:B, 8sui:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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