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BioLiP
>protein
IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRR

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6l6y:D 80 74 0.9865 0.9125 0.9865 1.23e-50 4a3n:A, 3f27:D, 6l6y:F
2 4y60:C 76 73 0.8919 0.8684 0.9041 3.99e-45
3 4s2q:D 76 74 0.7162 0.6974 0.7162 5.54e-35 4euw:A
4 6t78:A 77 74 0.6486 0.6234 0.6486 1.60e-33 6t78:B, 3u2b:C
5 1gt0:D 79 74 0.6081 0.5696 0.6081 2.33e-33 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
6 2gzk:A 159 71 0.5135 0.2390 0.5352 5.16e-25 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
7 2gzk:A 159 68 0.2297 0.1069 0.2500 0.002 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 7m5w:A 138 70 0.3784 0.2029 0.4000 1.63e-12 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
9 2lef:A 86 71 0.3108 0.2674 0.3239 2.87e-09
10 1j5n:A 93 54 0.2703 0.2151 0.3704 2.35e-08
11 5jh0:D 157 60 0.2432 0.1146 0.3000 3.28e-07 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 5jh0:D 157 55 0.1892 0.0892 0.2545 6.33e-04 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
13 1e7j:A 74 41 0.1757 0.1757 0.3171 1.35e-04 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
14 6cik:N 90 38 0.1622 0.1333 0.3158 0.005 6cg0:N, 6cim:N
15 6cij:N 133 49 0.1892 0.1053 0.2857 0.019 5zdz:N, 5ze1:N, 5ze2:N
16 6hb4:A 197 49 0.1486 0.0558 0.2245 0.13 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
17 5vsu:A 387 54 0.2703 0.0517 0.3704 0.59 6aso:A, 2kh9:A, 4n0t:A, 5tf6:A, 5tf6:C
18 6zm7:CE 124 38 0.1757 0.1048 0.3421 0.71 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
19 4uun:B 337 55 0.2432 0.0534 0.3273 1.6 5a1t:A, 5a1t:B, 4uun:A
20 6yw5:EE 367 39 0.2027 0.0409 0.3846 1.6 6ywe:EE, 6ywx:EE, 6ywy:EE
21 1e6z:B 498 39 0.1892 0.0281 0.3590 1.9 7c34:A, 7c34:B, 7c92:A, 7c92:B, 7cb1:A, 7cb1:B, 1e6r:A, 1e6r:B, 1e6z:A, 1h0g:B, 1h0g:A, 1h0i:A, 1h0i:B, 6jk9:A, 6jk9:B, 6jkf:A, 6jkf:B, 1o6i:A, 1o6i:B, 1ogg:A, 1ogg:B, 1ur8:A, 1ur8:B, 1ur9:A, 1ur9:B, 1w1p:A, 1w1p:B, 1w1t:A, 1w1t:B, 1w1v:A, 1w1v:B, 1w1y:A, 1w1y:B, 3wd1:A, 3wd2:A, 3wd3:A, 3wd4:A, 4z2g:A, 4z2h:A, 4z2i:A, 4z2j:A, 4z2k:A, 4z2l:A
22 7bzc:A 535 37 0.1892 0.0262 0.3784 4.6 7bzb:A
23 5iy7:M 310 34 0.1757 0.0419 0.3824 5.0 1c9b:A, 1c9b:E, 1c9b:I, 1c9b:M, 1c9b:Q, 1dl6:A, 5iy8:M, 5iy9:M, 5iyb:M, 5iyc:M, 5iyd:M, 7nvu:M, 7nw0:M, 6o9l:M, 2phg:A, 1rly:A, 8s51:M, 8s52:M, 8s5n:M, 1vol:A, 8wak:R, 8wal:R, 8wan:R, 8wao:R, 8wap:R, 8waq:R, 8war:R, 8was:R, 7zwc:M, 7zx8:M, 7zxe:M
24 1sy7:A 698 23 0.1486 0.0158 0.4783 5.2 1sy7:B
25 8p1x:AAA 492 58 0.2432 0.0366 0.3103 6.5 8p20:AAA, 8p20:BBB, 8p20:CCC, 8p20:DDD, 7qd7:AAA, 7qh9:AAA, 7qh9:BBB, 7qh9:CCC, 7qh9:DDD
26 7xxf:C 343 26 0.1622 0.0350 0.4615 8.4
27 6tyg:F 147 39 0.1892 0.0952 0.3590 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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