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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IRQFRRYGDPRYINNEAALIRGQWGLITADFGMVTQSQMENARLAILRRLPRGSFTLTMHTDYEEFPVHFAFKFTTGVPL
FEIMPISARRLNQAEAEGIFLAGRPFIPLQTVVVPQGRVDEYHVF

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiv:AQ 125 125 1.0000 1.0000 1.0000 1.86e-90 6hix:AQ
2 7aih:H 162 142 0.8400 0.6481 0.7394 7.61e-73 7ane:H
3 6o8w:N 141 69 0.1440 0.1277 0.2609 0.010 8a57:P, 8a5i:P, 8a63:P, 7nhk:P, 7nhn:P, 6o8x:N, 6o8y:N, 6o8z:N, 6o90:N, 7p7q:P, 7p7r:P, 7p7s:P, 7p7t:P, 7p7u:P, 8uu4:O, 8uu5:O, 8uu6:O, 8uu7:O, 8uu8:O, 8uu9:O, 8uua:O, 6w6p:N, 6wu9:N
4 8fmw:AO 138 32 0.0960 0.0870 0.3750 0.048 8fn2:O
5 5li0:P 141 51 0.1280 0.1135 0.3137 0.28 7asm:K, 7asn:Y, 7aso:P, 7asp:K, 6ddd:Y, 6ddg:Y, 6fxc:AK, 6fxc:BK, 5hkv:J, 5hl7:J, 6hma:K, 5nd8:P, 5nd9:P, 5ngm:AK, 7nhl:P, 7nhm:P, 5nrg:J, 8p2f:P, 8p2g:P, 8p2h:P, 7p48:K, 6s0x:K, 6s0z:K, 6s12:K, 6s13:K, 6sj6:P, 5t7v:LP, 5tcu:LP, 7ttu:Y, 7ttw:Y, 4wce:J, 4wf9:J, 4wfa:J, 4wfb:J, 6wqn:Y, 6wqq:Y, 6wrs:Y, 6wru:Y, 8y36:K, 8y37:K, 8y38:K, 8y39:K, 6yef:P
6 5ovt:A 183 86 0.1920 0.1311 0.2791 0.54 5ovt:B, 5ovt:C, 5ovt:D, 5ovt:E, 5ovt:F, 5ovt:G
7 6dzi:N 136 32 0.0960 0.0882 0.3750 0.62 6dzp:N, 7f0d:M, 8fr8:N, 8kab:N, 7kgb:M, 7msc:M, 7msh:M, 7msm:M, 7msz:M, 7mt2:M, 7mt3:M, 7mt7:M, 5o60:N, 5o61:N, 7s0s:O, 7sfr:M, 5v7q:M, 5v93:M, 8v9j:O, 8v9k:O, 8v9l:O, 7xam:N, 5xym:M, 8xz3:N, 7y41:N, 5zeb:N, 5zep:N, 5zet:N
8 8rd8:Lg 137 33 0.1120 0.1022 0.4242 0.66 8rdv:Lg, 8rdw:Lg
9 1xdi:A 459 42 0.1120 0.0305 0.3333 0.82 1xdi:B
10 7azo:L16A 141 33 0.0960 0.0851 0.3636 0.85 5a9z:AN, 5aa0:AN, 7azo:L16B, 7azs:L16A, 7azs:L16B, 9b00:1Q, 9b00:2Q, 6b4v:N, 6b4v:RB, 6boh:N, 6boh:SB, 6bok:N, 6bok:QB, 6buw:RQ, 6buw:YQ, 6bz6:RQ, 6bz6:YQ, 6bz7:RQ, 6bz7:YQ, 6bz8:RQ, 6bz8:YQ, 6c5l:BQ, 6c5l:DQ, 6cae:1Q, 6cae:2Q, 6cfj:1Q, 6cfj:2Q, 6cfk:1Q, 6cfk:2Q, 6cfl:1Q, 6cfl:2Q, 8cvj:1Q, 8cvj:2Q, 8cvk:1Q, 8cvk:2Q, 8cvl:1Q, 8cvl:2Q, 5czp:YQ, 5czp:RQ, 6czr:1Q, 6czr:2Q, 5d8b:K, 5d8b:GB, 5dfe:YQ, 5dfe:RQ, 5dox:1Q, 5dox:2Q, 5doy:1Q, 5doy:2Q, 5e7k:88, 5e7k:45, 5e81:88, 5e81:45, 8ekb:1Q, 8ekb:2Q, 5el4:88, 5el4:45, 5el5:88, 5el5:45, 5el6:88, 5el6:45, 5el7:88, 5el7:45, 8ev6:1Q, 8ev6:2Q, 8ev7:1Q, 8ev7:2Q, 5f8k:1Q, 5f8k:2Q, 8fc1:1Q, 8fc1:2Q, 8fc2:1Q, 8fc2:2Q, 8fc3:1Q, 8fc3:2Q, 8fc4:1Q, 8fc4:2Q, 8fc5:1Q, 8fc5:2Q, 8fc6:1Q, 8fc6:2Q, 5fdu:1Q, 5fdu:2Q, 5fdv:1Q, 5fdv:2Q, 6fkr:1Q, 6fkr:2Q, 8fom:RQ, 8fom:YQ, 8fon:RQ, 8fon:YQ, 8g29:1Q, 8g29:2Q, 8g2a:1Q, 8g2a:2Q, 8g2b:1Q, 8g2b:2Q, 8g2c:1Q, 8g2c:2Q, 8g2d:1Q, 8g2d:2Q, 6gsj:88, 6gsj:45, 6gsk:88, 6gsk:45, 6gsl:88, 6gsl:45, 6gzq:L1, 6gzx:L1, 6gzx:L2, 6gzz:L1, 6gzz:L2, 5hau:1O, 5hau:2O, 5hcp:1Q, 5hcp:2Q, 5hcq:1Q, 5hcq:2Q, 5hcr:1Q, 5hcr:2Q, 5hd1:1Q, 5hd1:2Q, 5ib7:88, 5ib7:45, 5ib8:88, 5ib8:45, 5ibb:88, 5ibb:45, 5imq:i, 5imr:i, 5j30:RQ, 5j30:YQ, 5j3c:RQ, 5j3c:YQ, 5j4b:1Q, 5j4b:2Q, 5j4c:1Q, 5j4c:2Q, 5j4d:N, 5j4d:SB, 5j8b:Q, 7jql:1Q, 7jql:2Q, 7jqm:1Q, 7jqm:2Q, 4l47:RQ, 4l47:YQ, 4l71:RQ, 4l71:YQ, 4lel:RQ, 4lel:YQ, 4lfz:RQ, 4lfz:YQ, 7lh5:BQ, 7lh5:DQ, 4lnt:RQ, 4lnt:YQ, 4lsk:RQ, 4lsk:YQ, 4lt8:RQ, 4lt8:YQ, 7md7:1Q, 7md7:2Q, 6n1d:AL16, 6n1d:BL16, 6n9e:1Q, 6n9e:2Q, 6n9f:1Q, 6n9f:2Q, 5ndj:88, 5ndj:45, 5ndk:88, 5ndk:45, 6nd5:1Q, 6nd5:2Q, 6nd6:1Q, 6nd6:2Q, 6ndk:RQ, 6ndk:YQ, 6nsh:RQ, 6nsh:YQ, 6nta:RQ, 6nta:YQ, 6nuo:RQ, 6nuo:YQ, 6nwy:RQ, 6nwy:YQ, 6o3m:RQ, 6o3m:YQ, 6o97:1Q, 6o97:2Q, 6of1:1Q, 6of1:2Q, 6of6:RQ, 6of6:YQ, 6oj2:RQ, 6oj2:YQ, 6ope:RQ, 6ope:YQ, 6ord:RQ, 6ord:YQ, 6osi:RQ, 6osi:YQ, 5ot7:r, 6otr:RQ, 6otr:YQ, 6oxa:RQ, 6oxa:YQ, 6oxi:RQ, 6oxi:YQ, 4p6f:RQ, 4p6f:YQ, 4p70:RQ, 4p70:YQ, 6q95:M, 6qnq:88, 6qnq:45, 6qnr:88, 6qnr:45, 7rq8:1Q, 7rq8:2Q, 7rq9:1Q, 7rq9:2Q, 7rqa:1Q, 7rqa:2Q, 7rqb:1Q, 7rqb:2Q, 7rqc:1Q, 7rqc:2Q, 7rqd:1Q, 7rqd:2Q, 7rqe:1Q, 7rqe:2Q, 8t8b:1Q, 8t8b:2Q, 8t8c:1Q, 8t8c:2Q, 4tua:RQ, 4tua:YQ, 4tub:RQ, 4tub:YQ, 4tuc:RQ, 4tuc:YQ, 4tud:RQ, 4tud:YQ, 4tue:RQ, 4tue:YQ, 7u2h:1Q, 7u2h:2Q, 7u2i:1Q, 7u2i:2Q, 7u2j:1Q, 7u2j:2Q, 6ucq:1Q, 6ucq:2Q, 8ud6:1Q, 8ud6:2Q, 8ud7:1Q, 8ud7:2Q, 8ud8:1Q, 8ud8:2Q, 6uo1:1Q, 6uo1:2Q, 5uq7:Q, 5uq8:Q, 8uvr:1Q, 8uvr:2Q, 8uvs:1Q, 8uvs:2Q, 4v4i:K, 4v4j:K, 4v4x:BP, 4v4y:BP, 4v4z:BP, 4v51:BQ, 4v51:DQ, 4v5a:BQ, 4v5a:DQ, 4v5c:BQ, 4v5c:DQ, 4v5d:BQ, 4v5d:DQ, 4v5e:BQ, 4v5e:DQ, 4v5f:BQ, 4v5f:DQ, 4v5g:BQ, 4v5g:DQ, 4v5j:BQ, 4v5j:DQ, 4v5k:BQ, 4v5k:DQ, 4v5l:BQ, 4v5m:BQ, 4v5n:BQ, 4v5p:BQ, 4v5p:DQ, 4v5q:BQ, 4v5q:DQ, 4v5r:BQ, 4v5r:DQ, 4v5s:BQ, 4v5s:DQ, 4v63:BQ, 4v63:DQ, 4v67:BQ, 4v67:DQ, 4v68:BQ, 4v6a:BQ, 4v6a:DQ, 4v6f:AP, 4v6f:DP, 4v6g:BP, 4v6g:DP, 4v7j:AQ, 4v7j:BQ, 4v7k:AQ, 4v7k:BQ, 4v7l:BQ, 4v7l:DQ, 4v7m:BQ, 4v7m:DQ, 4v7p:BM, 4v7p:CM, 4v7w:BQ, 4v7w:DQ, 4v7x:BQ, 4v7x:DQ, 4v7y:BQ, 4v7y:DQ, 4v7z:BQ, 4v7z:DQ, 4v83:BM, 4v83:DM, 4v84:BM, 4v84:DM, 4v87:AP, 4v87:DP, 4v8a:AQ, 4v8a:BQ, 4v8b:BP, 4v8b:DP, 4v8c:AP, 4v8c:BP, 4v8d:BP, 4v8d:DP, 4v8e:AP, 4v8e:CP, 4v8f:AP, 4v8f:DP, 4v8g:BQ, 4v8g:DQ, 4v8h:BQ, 4v8h:DQ, 4v8i:BQ, 4v8i:DQ, 4v8j:BQ, 4v8j:DQ, 4v8n:BQ, 4v8n:DQ, 4v8o:BQ, 4v8q:AQ, 4v8u:BQ, 4v8u:DQ, 4v8x:BQ, 4v8x:DQ, 5v8i:1Q, 5v8i:2Q, 4v90:BQ, 4v95:BQ, 4v95:DQ, 4v97:BQ, 4v97:DQ, 4v9a:BP, 4v9a:DP, 4v9b:BP, 4v9b:DP, 4v9h:BQ, 4v9i:BQ, 4v9i:DQ, 4v9j:BQ, 4v9j:DQ, 4v9k:BQ, 4v9k:DQ, 4v9l:BQ, 4v9l:DQ, 4v9m:BQ, 4v9m:DQ, 4v9n:BQ, 4v9n:DQ, 4v9q:AM, 4v9q:CM, 4v9r:BQ, 4v9r:DQ, 4v9s:BQ, 4v9s:DQ, 5vp2:1Q, 5vp2:2Q, 5vpo:RQ, 5vpo:YQ, 5vpp:RQ, 5vpp:YQ, 8vtu:1Q, 8vtu:2Q, 8vtv:1Q, 8vtv:2Q, 8vtw:1Q, 8vtw:2Q, 8vtx:1Q, 8vtx:2Q, 8vty:1Q, 8vty:2Q, 1vvj:RQ, 1vvj:YQ, 1vy4:BQ, 1vy4:DQ, 1vy5:BQ, 1vy5:DQ, 1vy6:BQ, 1vy6:DQ, 1vy7:BQ, 1vy7:DQ, 4w29:BQ, 4w29:DQ, 4w2e:Q, 4w2f:BQ, 4w2f:DQ, 4w2g:BQ, 4w2g:DQ, 4w2h:BQ, 4w2h:DQ, 4w2i:BQ, 4w2i:DQ, 4w4g:RQ, 4w4g:YQ, 5w4k:1Q, 5w4k:2Q, 5wis:1Q, 5wis:2Q, 5wit:1Q, 5wit:2Q, 4wpo:AQ, 4wpo:CQ, 4wq1:88, 4wq1:45, 4wqf:AQ, 4wqf:CQ, 4wqr:88, 4wqr:45, 4wqu:AQ, 4wqu:CQ, 4wqy:AQ, 4wqy:CQ, 4wr6:88, 4wr6:45, 4wra:88, 4wra:45, 4wro:88, 4wsd:88, 4wsd:45, 4wsm:88, 4wsm:45, 4wt1:88, 4wt1:45, 4wt8:CP, 4wt8:DP, 4wu1:88, 4wu1:45, 4wzd:88, 4wzd:45, 4wzo:88, 4wzo:45, 4xej:AL16, 4xej:BL16, 6xhv:1Q, 6xhv:2Q, 6xhw:1Q, 6xhw:2Q, 6xhx:1Q, 6xhx:2Q, 6xhy:1Q, 6xhy:2Q, 6xqd:1Q, 6xqd:2Q, 6xqe:1Q, 6xqe:2Q, 4y4o:1Q, 4y4o:2Q, 4y4p:1Q, 4y4p:2Q, 4ypb:RQ, 4ypb:YQ, 4yzv:RQ, 4yzv:YQ, 4z3s:1Q, 4z3s:2Q, 4z8c:1Q, 4z8c:2Q, 4zer:1Q, 4zer:2Q, 5zlu:j, 4zsn:RQ, 4zsn:YQ
11 7kaw:C 593 67 0.1600 0.0337 0.2985 1.1 7kaw:B, 7kaz:C, 7kaz:B
12 9c4g:l 136 73 0.1520 0.1397 0.2603 1.2 8crx:l, 8cvm:l
13 7p2d:A 751 66 0.1440 0.0240 0.2727 2.1 7akk:D, 7akk:H, 1bho:1, 1bho:2, 1ido:A, 1jlm:A, 1m1u:A, 3q3g:G, 3q3g:E, 3q3g:I, 3q3g:L, 3qa3:G, 3qa3:E, 3qa3:I, 3qa3:L, 6rhw:C, 8voi:A, 4xw2:A
14 7nhk:O 146 86 0.2000 0.1712 0.2907 2.8 6o8w:M, 6o8x:M, 6o8y:M, 6o8z:M, 6o90:M, 7p7q:O, 7p7r:O, 7p7s:O, 7p7t:O, 7p7u:O, 6w6p:M, 6wu9:M
15 7unr:O 137 33 0.0960 0.0876 0.3636 3.9 8cd1:M, 6spb:M, 6spd:M, 6spf:M, 6spg:M, 7unu:O, 7unv:O, 7unw:O
16 5myj:BP 134 69 0.1360 0.1269 0.2464 5.2
17 7aqc:M 138 33 0.0880 0.0797 0.3333 5.5 7aqd:M, 7as8:Q, 7as9:Q, 8buu:M, 6ha1:M, 6ha8:M, 6htq:M, 3j9w:BP, 5njt:f, 7o5b:j, 7ope:Q, 8qcq:M, 7qgu:M, 7qh4:M, 8qpp:j, 7qv1:M, 7qv2:M, 7qv3:M, 8r55:j, 8s1p:M, 8s1u:M, 6tnn:f, 6tpq:f
18 3lmm:D 556 31 0.0880 0.0198 0.3548 6.5 3lmm:A, 3lmm:B, 3lmm:C
19 1z6r:A 382 60 0.1520 0.0497 0.3167 7.0 3bp8:A, 3bp8:B, 1z6r:B, 1z6r:C, 1z6r:D
20 6b03:A 896 19 0.0720 0.0100 0.4737 8.0 6b05:A, 6brs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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