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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IRCFITPDISKDCPNGHVCYTKTWCDAFCSIRGKRVDLGCAATCPTVKTGVDIQCCSTDNCNPFP

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1lxg:A 71 66 1.0000 0.9155 0.9848 2.35e-41 1lxh:A, 7pc0:K, 6zfm:A, 6zfm:B, 6zfm:D, 6zfm:E
2 8vy8:B 75 61 0.5385 0.4667 0.5738 1.99e-18 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
3 1v6p:A 62 44 0.3385 0.3548 0.5000 2.82e-07 1v6p:B
4 5ebx:A 62 57 0.3538 0.3710 0.4035 1.48e-06 6ebx:B
5 9avv:G 62 44 0.3231 0.3387 0.4773 5.60e-06 9avv:F, 9awk:F, 9awk:G
6 5mg9:A 65 56 0.3385 0.3385 0.3929 0.005
7 2bhi:A 60 59 0.3385 0.3667 0.3729 0.028 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
8 7c28:A 65 54 0.2769 0.2769 0.3333 0.12 7c28:B
9 1woj:A 209 24 0.1846 0.0574 0.5000 1.1
10 8q7h:A 1403 26 0.1692 0.0078 0.4231 2.5
11 2ydc:A 217 18 0.1538 0.0461 0.5556 5.2 4wcc:A, 4wda:A, 4wdb:A, 4wdf:A, 4wdg:A, 4wfr:A, 2ydb:A, 2ydd:A, 2yoz:A, 2yp0:A, 2ypc:A, 2ype:A, 2yph:A, 2yq9:A, 3zbr:A, 3zbr:B, 3zbs:A, 3zbz:A
12 2bne:B 238 42 0.1692 0.0462 0.2619 6.6 2bnd:A, 2bnd:B, 2bne:A, 2bnf:A, 2bnf:B, 2v4y:A, 2v4y:E, 2v4y:F, 2v4y:B, 2v4y:D, 2v4y:C
13 4aw2:A 398 22 0.1538 0.0251 0.4545 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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