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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEI
VDT

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kik:A 94 84 1.0000 0.8830 0.9881 6.56e-54 4c31:B, 4c31:E, 3kik:B, 3kik:D, 3kik:C, 3kjl:A, 3kjl:B, 3kjl:C, 3kjl:D, 4mbe:F, 4mbe:C
2 1xpl:A 389 69 0.2289 0.0488 0.2754 0.14 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
3 8twu:A 403 81 0.2289 0.0471 0.2346 0.69 8hny:A, 8hnz:A, 8ho0:A, 8ho1:A, 7s3j:A, 7s3j:B, 7s3t:A, 6vxv:A, 6vza:A, 6vzb:A, 6w0s:A, 6w0s:B, 6xai:A, 6xai:B, 6xaj:A, 6xak:A, 6xak:B, 6xal:A, 6xam:A
4 7mq8:NH 1066 46 0.1807 0.0141 0.3261 0.90 7mqa:NH
5 5hyh:A 287 45 0.1566 0.0453 0.2889 2.7 5hyg:A
6 5e3x:A 489 32 0.1446 0.0245 0.3750 3.1
7 4e0u:A 408 66 0.2651 0.0539 0.3333 3.8 4e0u:B, 7xvj:A, 7xvj:B, 7xvj:C, 7xvj:D, 7y3v:A, 7y3v:B, 7y3v:C, 7y3v:D
8 5j6f:A 352 32 0.1205 0.0284 0.3125 5.6 5j6f:B
9 4b7f:A 515 42 0.1325 0.0214 0.2619 5.7 4b7f:B, 4b7f:C, 4b7f:D, 4b7g:A, 4b7g:B, 4b7g:C, 4b7g:D, 4b7h:A, 4b7h:B, 4b7h:C, 4b7h:D
10 2a81:A 235 36 0.1325 0.0468 0.3056 6.3
11 7zel:A 827 76 0.2048 0.0206 0.2237 6.6 7zel:B, 7zep:B, 7zes:A, 7zes:B
12 6y3z:P 348 72 0.2289 0.0546 0.2639 8.4
13 8pv1:LB 389 75 0.2771 0.0591 0.3067 8.9 7olc:LB, 7old:LB, 8oo0:LB, 8pv2:LB, 8pv3:LB, 8pv4:LB, 8pv5:LB, 8pv6:LB, 8pv7:LB, 8pv8:LB, 8pvk:LB, 8pvl:LB, 7r81:E1, 7z3n:LB, 7z3o:LB
14 6j72:A 561 48 0.1687 0.0250 0.2917 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218