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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF
VCDLKTLIGYSAAELNRLVIECEQKKLARM

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1awc:A 110 110 1.0000 1.0000 1.0000 3.57e-79
2 6da1:B 138 99 0.5818 0.4638 0.6465 2.00e-44 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
3 4bqa:A 132 98 0.5636 0.4697 0.6327 6.68e-43
4 6vgd:A 98 80 0.4636 0.5204 0.6375 4.69e-36 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
5 3zp5:A 92 80 0.4636 0.5543 0.6375 1.58e-35
6 4uuv:A 96 89 0.4364 0.5000 0.5393 4.22e-30 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
7 1dux:C 86 83 0.4545 0.5814 0.6024 9.54e-29 1dux:F
8 7jsa:J 88 80 0.4182 0.5227 0.5750 3.55e-28 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
9 1hbx:G 112 66 0.3636 0.3571 0.6061 2.77e-23 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
10 8bzm:H 88 82 0.3818 0.4773 0.5122 1.40e-20 8bzm:B
11 3jtg:A 95 81 0.3273 0.3789 0.4444 8.60e-18
12 8e67:F 97 80 0.2909 0.3299 0.4000 1.37e-16 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
13 1yo5:C 88 84 0.3636 0.4545 0.4762 1.77e-16
14 8eo4:F 95 88 0.3182 0.3684 0.3977 2.19e-13 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 3vnq:A 497 77 0.2364 0.0523 0.3377 5.16e-04 3vnr:A, 3vns:A
16 5n9x:A 489 77 0.2000 0.0450 0.2857 0.006 5n9x:B
17 4d56:A 482 37 0.1364 0.0311 0.4054 0.27 4d4g:A, 4d4i:A, 4d57:A
18 8jbr:A 1023 50 0.1636 0.0176 0.3600 0.37
19 7uzf:C 602 30 0.1273 0.0233 0.4667 1.5 9b8p:A, 9brd:A, 7khr:C, 7u4t:B, 7u8p:C, 7u8q:B, 7u8r:A, 7unf:M, 7uzg:C, 7uzh:B, 7uzi:B, 7uzj:C, 7uzk:C, 6vq6:C, 6vq7:B, 6vq8:A, 6vq9:C, 6vqa:B, 6vqb:A, 6wlz:C, 6wm2:C, 6wm3:B, 6wm4:A, 6xbw:C, 6xby:A
20 2j0p:A 328 29 0.1091 0.0366 0.4138 5.6
21 2jes:A 370 46 0.1273 0.0378 0.3043 5.7 2jes:C, 2jes:E, 2jes:G, 2jes:I, 2jes:K, 2jes:M, 2jes:O, 2jes:Q, 2jes:S, 2jes:U, 2jes:W, 2jes:Y
22 8em4:A 3818 30 0.0909 0.0026 0.3333 9.5 8em4:B
23 8em7:A 4378 30 0.0909 0.0023 0.3333 9.6 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218