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BioLiP
>protein
IQLGVTRNKIMTAQYECYQKIMQDPVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNWFRHPAS
NRTWTNYTQCN

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rwf:A 555 97 1.0000 0.1640 0.9381 4.75e-62 6v2e:A, 2xvt:C, 2xvt:F
2 6zho:A 577 96 0.9560 0.1508 0.9062 5.60e-59 8ax5:A, 8ax6:A, 8ax7:A, 6d1u:A, 6d1u:B, 6d1u:C, 3n7r:A, 3n7r:C, 3n7r:D, 3n7r:B, 3n7s:A, 3n7s:C, 3n7s:D, 3n7s:B, 7p0f:A, 7p0i:A, 4rwg:A, 4rwg:B, 4rwg:C, 5v6y:A, 5v6y:B, 5v6y:C, 5v6y:D, 6zis:A
3 7knu:R 341 90 0.9231 0.2463 0.9333 1.26e-56
4 6pfo:A 474 93 0.6484 0.1245 0.6344 3.74e-41 5ii0:A, 5ii0:B, 5ii0:C, 6pfo:B, 6pgq:A
5 7tyn:R 373 93 0.6484 0.1582 0.6344 2.24e-39 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
6 6fj3:A 562 83 0.3407 0.0552 0.3735 6.84e-14 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
7 6nbh:R 379 81 0.3297 0.0792 0.3704 9.75e-13 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
8 3l2j:A 484 80 0.3187 0.0599 0.3625 1.59e-12 3c4m:A, 3c4m:B, 3h3g:A, 3l2j:B
9 7f16:R 376 63 0.2418 0.0585 0.3492 3.43e-09
10 7vvo:R 302 40 0.1978 0.0596 0.4500 4.59e-09 8gw8:R
11 7dur:R 371 93 0.2857 0.0701 0.2796 2.52e-07 7lll:R, 7lly:R
12 5yqz:R 558 65 0.2637 0.0430 0.3692 7.60e-07 5xez:A, 5xf1:A
13 5xez:B 499 65 0.2637 0.0481 0.3692 1.23e-06 5xf1:B
14 6whc:R 371 65 0.2637 0.0647 0.3692 1.61e-06 8jru:R, 8wg8:R
15 7lci:R 393 97 0.2747 0.0636 0.2577 2.08e-05 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
16 2xdg:A 89 55 0.1868 0.1910 0.3091 7.55e-05 2xdg:B
17 6ln2:A 437 76 0.2418 0.0503 0.2895 9.64e-05 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
18 6wpw:R 398 65 0.2527 0.0578 0.3538 1.99e-04 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
19 3n96:A 473 67 0.2527 0.0486 0.3433 8.10e-04 3ehs:A, 3eht:A, 3n93:B, 3n93:A, 3n95:C, 3n95:D, 3n95:A, 3n95:B, 3n96:C, 3n96:D, 3n96:B
20 3n94:A 466 48 0.1648 0.0322 0.3125 0.002
21 8e3x:R 362 45 0.1648 0.0414 0.3333 0.004 6m1i:A, 6p9y:R
22 6lpb:R 331 48 0.1648 0.0453 0.3125 0.005
23 7fin:R 380 82 0.2308 0.0553 0.2561 0.007 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
24 7vqx:R 361 46 0.1538 0.0388 0.3043 0.045 7wbj:R
25 2jnd:A 79 52 0.1758 0.2025 0.3077 0.060
26 8x1w:A 439 54 0.1538 0.0319 0.2593 0.069 8x3e:A
27 8e3y:R 372 55 0.1429 0.0349 0.2364 0.30 8e3z:R, 6vn7:R
28 8bot:A 3528 25 0.1099 0.0028 0.4000 0.52
29 7nfc:A 3562 25 0.1099 0.0028 0.4000 0.52 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
30 7k1j:A 3584 25 0.1099 0.0028 0.4000 0.52 7k19:A
31 7nfe:A 3585 25 0.1099 0.0028 0.4000 0.52
32 7k1k:A 3604 25 0.1099 0.0028 0.4000 0.52 7k1b:A
33 7k1n:A 3634 25 0.1099 0.0028 0.4000 0.52 7z88:A
34 5y3r:C 3636 25 0.1099 0.0028 0.4000 0.52
35 7k17:B 3645 25 0.1099 0.0027 0.4000 0.52 7k17:A
36 7otm:A 3656 25 0.1099 0.0027 0.4000 0.52 7otp:A, 7otv:A, 7otw:A, 7oty:A
37 8ez9:L 3662 25 0.1099 0.0027 0.4000 0.52 8ez9:C
38 7k0y:A 3669 25 0.1099 0.0027 0.4000 0.52
39 7z87:A 3689 25 0.1099 0.0027 0.4000 0.52
40 6zha:A 3707 25 0.1099 0.0027 0.4000 0.52 6zh8:A
41 8eza:L 3720 25 0.1099 0.0027 0.4000 0.52 8eza:C, 7lt3:C, 7lt3:L
42 8ezb:C 3724 25 0.1099 0.0027 0.4000 0.52 8ezb:L
43 6zhe:F 3731 25 0.1099 0.0027 0.4000 0.52
44 7sud:A 3740 25 0.1099 0.0027 0.4000 0.52
45 6zhe:A 3768 25 0.1099 0.0027 0.4000 0.52
46 7su3:A 3802 25 0.1099 0.0026 0.4000 0.52
47 7sgl:A 3852 25 0.1099 0.0026 0.4000 0.52
48 5azb:A 284 22 0.0879 0.0282 0.3636 3.7 5azc:A
49 6enz:A 487 23 0.0879 0.0164 0.3478 5.9 6enz:B
50 6ueb:A 2099 29 0.0989 0.0043 0.3103 6.5
51 8pk0:l 72 29 0.1099 0.1389 0.3448 7.0
52 6gsd:A 364 25 0.0879 0.0220 0.3200 8.1 5mlh:A, 5mlm:A, 5mlr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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