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BioLiP
>protein
IQLGVTRNKIMTAQYECYQKIMQDPIEGVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNWFRH
PASNRTWTNYTQCN

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rwf:A 555 97 1.0000 0.1694 0.9691 8.71e-65 6v2e:A, 2xvt:C, 2xvt:F
2 6zho:A 577 96 0.9574 0.1560 0.9375 1.21e-61 8ax5:A, 8ax6:A, 8ax7:A, 6d1u:A, 6d1u:B, 6d1u:C, 3n7r:A, 3n7r:C, 3n7r:D, 3n7r:B, 3n7s:A, 3n7s:C, 3n7s:D, 3n7s:B, 7p0f:A, 7p0i:A, 4rwg:A, 4rwg:B, 4rwg:C, 5v6y:A, 5v6y:B, 5v6y:C, 5v6y:D, 6zis:A
3 7knu:R 341 93 0.8936 0.2463 0.9032 1.36e-58
4 7tyn:R 373 93 0.6489 0.1635 0.6559 6.93e-44 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
5 6pfo:A 474 93 0.6489 0.1287 0.6559 8.58e-43 5ii0:A, 5ii0:B, 5ii0:C, 6pfo:B, 6pgq:A
6 6fj3:A 562 84 0.3404 0.0569 0.3810 2.22e-14 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
7 6nbh:R 379 81 0.3191 0.0792 0.3704 9.25e-14 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
8 3l2j:A 484 81 0.3191 0.0620 0.3704 1.71e-13 3c4m:A, 3c4m:B, 3h3g:A, 3l2j:B
9 7f16:R 376 85 0.2872 0.0718 0.3176 7.04e-10
10 7vvo:R 302 40 0.1915 0.0596 0.4500 4.18e-09 8gw8:R
11 5yqz:R 558 81 0.2766 0.0466 0.3210 3.43e-07 5xez:A, 5xf1:A
12 7dur:R 371 95 0.2766 0.0701 0.2737 4.77e-07 7lll:R, 7lly:R
13 5xez:B 499 81 0.2766 0.0521 0.3210 5.76e-07 5xf1:B
14 6whc:R 371 81 0.2766 0.0701 0.3210 6.91e-07 8jru:R, 8wg8:R
15 2xdg:A 89 56 0.1915 0.2022 0.3214 2.12e-05 2xdg:B
16 7lci:R 393 97 0.2660 0.0636 0.2577 2.23e-05 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
17 7fin:R 380 82 0.2234 0.0553 0.2561 8.45e-05 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
18 6wpw:R 398 81 0.2660 0.0628 0.3086 8.75e-05 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
19 6ln2:A 437 78 0.2340 0.0503 0.2821 1.01e-04 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
20 3n96:A 473 67 0.2447 0.0486 0.3433 8.49e-04 3ehs:A, 3eht:A, 3n93:B, 3n93:A, 3n95:C, 3n95:D, 3n95:A, 3n95:B, 3n96:C, 3n96:D, 3n96:B
21 3n94:A 466 48 0.1596 0.0322 0.3125 0.002
22 8e3x:R 362 45 0.1596 0.0414 0.3333 0.004 6m1i:A, 6p9y:R
23 6lpb:R 331 48 0.1596 0.0453 0.3125 0.005
24 8x1w:A 439 55 0.1596 0.0342 0.2727 0.007 8x3e:A
25 7vqx:R 361 68 0.1702 0.0443 0.2353 0.044 7wbj:R
26 2jnd:A 79 52 0.1702 0.2025 0.3077 0.056
27 8j80:B 288 41 0.1489 0.0486 0.3415 0.073 8j7u:A, 8j7u:B, 8j7w:A, 8j7w:B, 8j7y:A, 8j7y:B
28 8e3y:R 372 51 0.1489 0.0376 0.2745 0.16 8e3z:R, 6vn7:R
29 3a9b:A 374 74 0.2021 0.0508 0.2568 1.8 3abx:A, 3vof:A
30 2e4h:A 74 48 0.2234 0.2838 0.4375 2.4
31 3ctp:A 266 35 0.1064 0.0376 0.2857 4.8 3ctp:B
32 6enz:A 487 23 0.0851 0.0164 0.3478 6.3 6enz:B
33 8pk0:l 72 29 0.1064 0.1389 0.3448 7.2
34 6wzg:R 379 54 0.1489 0.0369 0.2593 7.7 7d3s:R, 6wi9:R
35 6gsd:A 364 25 0.0851 0.0220 0.3200 8.7 5mlh:A, 5mlm:A, 5mlr:A
36 5ogx:A 333 15 0.0851 0.0240 0.5333 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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