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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDP
DLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKIN
KKIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIAD
RKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERR

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9fmd:R 328 285 1.0000 0.8537 0.9825 0.0 8ro2:R
2 8i0u:R 380 285 0.9750 0.7184 0.9579 0.0 8c6j:K, 8i0s:R, 8i0t:R, 8i0v:R, 8i0w:R, 6icz:R, 6id0:R, 6id1:R, 5mqf:C, 6qdv:K, 7w59:R, 7w5a:R, 7w5b:R, 5xjc:R, 5yzg:R, 6zym:C
3 6ff4:C 286 252 0.8821 0.8636 0.9802 3.52e-179 6ff7:C
4 8ch6:Y 306 249 0.7607 0.6961 0.8554 3.17e-143 7qtt:Y
5 7aav:v 206 201 0.6143 0.8350 0.8557 6.82e-115 7abi:v
6 8ro0:R 282 254 0.6214 0.6170 0.6850 5.26e-104 8ro1:R
7 7dvq:R 241 217 0.5500 0.6390 0.7097 1.09e-85
8 3jb9:M 207 219 0.3786 0.5121 0.4840 1.19e-50
9 7dco:P 246 218 0.2321 0.2642 0.2982 7.08e-17 6exn:K, 5gm6:P, 5gmk:P, 6j6g:P, 6j6h:P, 6j6n:P, 6j6q:P, 5lj3:K, 5lj5:K, 5lqw:M, 5wsg:P, 5y88:Q, 5ylz:Q
10 5mps:K 187 196 0.2250 0.3369 0.3214 1.93e-16 7b9v:K, 5mq0:K
11 6bk8:E 186 195 0.2179 0.3280 0.3128 3.07e-16
12 2xrc:C 454 71 0.0786 0.0485 0.3099 0.36
13 6mpx:A 673 47 0.0571 0.0238 0.3404 1.9 1t61:C, 1t61:F
14 6mpx:A 673 47 0.0571 0.0238 0.3404 1.9 1t61:C, 1t61:F
15 7t3u:C 1575 30 0.0429 0.0076 0.4000 2.3
16 7t3p:A 2066 30 0.0429 0.0058 0.4000 2.3 7t3p:B, 7t3p:C, 7t3p:D
17 7t3u:A 2020 30 0.0429 0.0059 0.4000 2.3 7t3u:D
18 7t3q:A 2103 30 0.0429 0.0057 0.4000 2.4 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
19 4xrf:A 142 57 0.0607 0.1197 0.2982 2.9
20 6z6f:B 661 96 0.1107 0.0469 0.3229 3.3 6z6f:A, 6z6h:A, 6z6h:B, 6z6h:F, 6z6h:G, 6z6o:A, 6z6o:B, 6z6o:E, 6z6o:F, 6z6o:I, 6z6o:J, 6z6o:M, 6z6o:N, 6z6p:K, 6z6p:L
21 7aos:B 241 93 0.0750 0.0871 0.2258 5.6 3a9e:B, 7apo:A, 7apo:B, 1dkf:B, 4dqm:A, 4dqm:C, 5k13:A, 3kmr:A, 3kmz:B, 3kmz:A, 7qaa:B, 7wqq:A
22 2c0c:A 353 47 0.0464 0.0368 0.2766 6.5 2c0c:B, 2wek:A, 2wek:B, 2x1h:A, 2x1h:B, 2x7h:A, 2x7h:B, 7zej:A, 7zej:B
23 4ri5:A 284 32 0.0464 0.0458 0.4062 7.4 4qum:A, 4rh5:A, 4rh9:A, 4rhg:A, 4ri5:B, 4s0g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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