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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IPQLGQVQMLGLAAAVIGIGVLAAGYFLSPTSFFESYIYGYYVAMTIPLGCLGFLMVQHLTGGAWGVTVRRMLEAGAATL
PIMGLLFIPIALGYFDTYKALGLEHPLYEWANPEVVTPGGAEFDPIIAHKVPWLSPLWVTARIAIFFIIWSALALTLRAW
SRQQDAGGDAKKLATRMRRLSGIGVALFVITVTFFSFDVAMSLDPHWFSTIYGAHYMANAGLMTLAFLALMMSRVRDAAL
FREYVSVKPIHDIGKLIFAFTVLWTYMSYGQLVIIWSGDVAEFTPWYVHRTQHGWVFVALALMLFAFALPFFVLLFRGTK
RNLNTLATIAGWIVVMRFVDMAWIILPEFREHLWDIAITDVAAPIGLIGLVIALFAANVQQAPLLPLRDPNMEQLQN

The query sequence (length=397) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8k9e:F 397 397 1.0000 1.0000 1.0000 0.0 8k9f:F, 8x2j:F
2 8k9e:C 449 187 0.1108 0.0980 0.2353 0.002 8k9f:C, 8x2j:C
3 6lod:C 456 132 0.0730 0.0636 0.2197 0.029 6loe:C
4 7v6i:A 597 89 0.0680 0.0452 0.3034 0.13
5 6qwl:K 539 80 0.0529 0.0390 0.2625 0.25
6 6f0k:C 445 144 0.0680 0.0607 0.1875 0.26
7 4r7o:C 280 33 0.0327 0.0464 0.3939 3.5 4r7o:A, 4r7o:B, 4r7o:D, 4r7o:E, 4r7o:F, 4r7o:G
8 7ajt:UJ 1116 68 0.0428 0.0152 0.2500 9.3 7aju:UJ, 6zqc:UJ, 6zqd:UJ

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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