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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IPQKLFEVTSPLFPKPYPNNFETTTVITVPTGYRVKLVFQQFDLEPSEGCFYDYVKISADKKSLGRFCGQLGSPLGNPPG
KKEFMSQGNKMLLTFHTDFSNEENGTIMFYKGFLAYYQAVDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE
LQEDTHSCQAECSSELYTEASGYISSLEYPRSYPPDLRCNYSIRVERGLTLHLKFLEPFDIDDHQQVHCPYDQLQIYANG
KNIGEFCGKQRPPDLDTSSNAVDLLFFTDESGDSRGWKLRYTTEII

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f1c:A 291 287 1.0000 0.9828 0.9965 0.0 6f1c:C, 6f1d:A, 6f1h:A, 6f1h:C, 6f39:A, 6f39:B
2 4aqb:A 345 275 0.4266 0.3536 0.4436 1.80e-82 5ckq:A, 3dem:A, 3dem:B
3 4aqb:A 345 113 0.1399 0.1159 0.3540 4.98e-12 5ckq:A, 3dem:A, 3dem:B
4 4aqb:A 345 69 0.0734 0.0609 0.3043 0.004 5ckq:A, 3dem:A, 3dem:B
5 5ckn:A 278 283 0.4301 0.4424 0.4346 5.06e-82 5cis:A, 5ckm:A, 5ckn:D, 1nt0:A, 1nt0:G
6 6f1c:D 276 283 0.3811 0.3949 0.3852 3.16e-63 6f1c:B, 6f1h:D, 6f1h:B, 4lmf:A, 4lmf:B, 4lmf:C, 4lmf:D, 4lor:A, 1nzi:A, 1nzi:B
7 6f1c:D 276 111 0.1049 0.1087 0.2703 1.29e-06 6f1c:B, 6f1h:D, 6f1h:B, 4lmf:A, 4lmf:B, 4lmf:C, 4lmf:D, 4lor:A, 1nzi:A, 1nzi:B
8 1szb:A 167 171 0.2483 0.4251 0.4152 1.50e-38 1szb:B
9 1szb:A 167 115 0.1014 0.1737 0.2522 0.26 1szb:B
10 3pof:B 114 112 0.1713 0.4298 0.4375 1.08e-30 3pob:A, 3poe:A, 3pof:A, 3pog:A, 3pog:B, 3pog:C, 3poi:A, 3poi:B, 3poj:A, 3poj:B
11 3pof:B 114 113 0.1364 0.3421 0.3451 1.02e-11 3pob:A, 3poe:A, 3pof:A, 3pog:A, 3pog:B, 3pog:C, 3poi:A, 3poi:B, 3poj:A, 3poj:B
12 4los:A 187 115 0.1469 0.2246 0.3652 3.66e-19
13 4los:A 187 111 0.1049 0.1604 0.2703 6.49e-07
14 9en2:A 241 287 0.2622 0.3112 0.2613 8.78e-17 6fzv:D
15 9en2:A 241 115 0.1503 0.1784 0.3739 8.09e-15 6fzv:D
16 6fzw:D 180 119 0.1503 0.2389 0.3613 2.74e-15
17 6fzw:D 180 110 0.1434 0.2278 0.3727 1.50e-10
18 6fzw:D 180 40 0.0524 0.0833 0.3750 3.9
19 3kq4:B 457 277 0.2273 0.1422 0.2347 2.63e-14 3kq4:D, 3kq4:F
20 3kq4:B 457 109 0.1294 0.0810 0.3394 1.44e-11 3kq4:D, 3kq4:F
21 3kq4:B 457 115 0.1294 0.0810 0.3217 8.23e-09 3kq4:D, 3kq4:F
22 3kq4:B 457 270 0.2378 0.1488 0.2519 7.84e-07 3kq4:D, 3kq4:F
23 7m0r:E 458 286 0.2378 0.1485 0.2378 2.81e-13 7m0r:F
24 7m0r:E 458 115 0.1154 0.0721 0.2870 3.85e-07 7m0r:F
25 4gz9:A 562 286 0.2517 0.1281 0.2517 3.63e-13 9eou:A, 4gza:H, 2orz:A, 2qqm:A
26 4gz9:A 562 116 0.1154 0.0587 0.2845 5.43e-07 9eou:A, 4gza:H, 2orz:A, 2qqm:A
27 7t4s:F 363 112 0.1294 0.1019 0.3304 1.25e-10
28 7t4s:F 363 102 0.1084 0.0854 0.3039 7.62e-05
29 2wno:A 119 117 0.1154 0.2773 0.2821 9.70e-10
30 2wno:A 119 108 0.1329 0.3193 0.3519 7.60e-08
31 6v55:A 746 103 0.1224 0.0469 0.3398 1.50e-09
32 6v55:A 746 107 0.1049 0.0402 0.2804 4.56e-08
33 2qqo:A 431 115 0.1294 0.0858 0.3217 3.05e-09 5dn2:C, 5dn2:D, 5dn2:A, 5dq0:A, 7m22:N, 2qqo:B, 6tdb:A, 6tdb:B, 6tdb:C, 6tdb:D, 6tjt:A, 6tjt:B
34 2qqo:A 431 102 0.1119 0.0742 0.3137 5.24e-05 5dn2:C, 5dn2:D, 5dn2:A, 5dq0:A, 7m22:N, 2qqo:B, 6tdb:A, 6tdb:B, 6tdb:C, 6tdb:D, 6tjt:A, 6tjt:B
35 6gh8:A 120 115 0.1154 0.2750 0.2870 2.94e-08 6gh8:C
36 6gh8:A 120 112 0.0979 0.2333 0.2500 1.30e-04 6gh8:C
37 5fwt:A 293 106 0.1049 0.1024 0.2830 1.76e-04 5fws:A, 5fww:B
38 5fwt:A 293 115 0.1119 0.1092 0.2783 0.60 5fws:A, 5fww:B
39 8em4:A 3818 80 0.1014 0.0076 0.3625 5.72e-04 8em4:B
40 8em4:A 3818 47 0.0559 0.0042 0.3404 0.049 8em4:B
41 8em4:A 3818 37 0.0455 0.0034 0.3514 0.94 8em4:B
42 8em4:A 3818 64 0.0664 0.0050 0.2969 1.2 8em4:B
43 8em7:A 4378 80 0.1014 0.0066 0.3625 0.001 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
44 8em7:A 4378 51 0.0559 0.0037 0.3137 0.077 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
45 8em7:A 4378 37 0.0455 0.0030 0.3514 1.5 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
46 8em7:A 4378 64 0.0664 0.0043 0.2969 1.6 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
47 8em7:A 4378 22 0.0420 0.0027 0.5455 9.6 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
48 1lmj:A 86 60 0.0664 0.2209 0.3167 0.002
49 1n7d:A 639 58 0.0734 0.0329 0.3621 0.005 1ajj:A, 3bps:E, 1d2j:A, 1f8z:A, 2fcw:B, 3gcw:E, 3gcx:E, 1hj7:A, 1hz8:A, 1i0u:A, 2kri:B, 2lgp:A, 3m0c:C, 3p5b:L, 3p5c:L, 1xfe:A
50 8dvm:A 612 97 0.0944 0.0441 0.2784 0.007 4a0p:A, 8dvl:A, 8dvn:A
51 5b4x:B 479 50 0.0699 0.0418 0.4000 0.013 3a7q:B, 5b4x:D, 5b4y:B
52 1z6c:A 87 63 0.0734 0.2414 0.3333 0.015
53 1emn:A 82 48 0.0559 0.1951 0.3333 0.084 1emo:A
54 2bo2:A 140 42 0.0629 0.1286 0.4286 0.21 2bo2:B, 2bou:A, 7do4:A
55 1m74:A 802 57 0.0594 0.0212 0.2982 0.31 2ibm:A, 6itc:A, 3jv2:A, 3jv2:B, 1tf2:A, 7xha:A, 7xhb:A
56 6pog:B 236 43 0.0559 0.0678 0.3721 0.45
57 4rib:B 628 43 0.0629 0.0287 0.4186 1.1 4ri8:A, 4ri8:B, 4ri9:A, 4ri9:B, 4ria:A, 4ria:B, 4rib:A, 4ric:A, 4ric:B
58 6kfu:A 527 58 0.0664 0.0361 0.3276 1.2 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
59 4rec:A 593 43 0.0629 0.0304 0.4186 1.2 4rea:B, 4rea:A
60 4reb:A 566 43 0.0629 0.0318 0.4186 1.2
61 4bxw:B 287 32 0.0524 0.0523 0.4688 1.5 4bxw:A
62 5l0t:B 40 41 0.0594 0.4250 0.4146 1.6 5ky7:B, 5l0u:B, 5l0v:B
63 6pol:B 129 43 0.0490 0.1085 0.3256 2.1 6pol:D, 6pol:F
64 3h5c:B 312 29 0.0490 0.0449 0.4828 2.5
65 4fry:B 138 74 0.0629 0.1304 0.2432 2.6 4fry:A
66 6xhq:A 237 36 0.0524 0.0633 0.4167 2.8 6xhq:B, 6xhs:B, 6xhs:E, 6xht:A, 6xht:B, 6xht:E, 6xht:F
67 6l6r:A 610 29 0.0420 0.0197 0.4138 3.2 6l6r:B, 7nam:A, 3sob:B, 3soq:A, 3sov:A
68 2oi2:A 285 118 0.1014 0.1018 0.2458 3.9
69 4izt:A 263 64 0.0629 0.0684 0.2812 3.9 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
70 7z8f:e 4579 66 0.0734 0.0046 0.3182 6.3 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
71 7ynd:A 1567 65 0.0629 0.0115 0.2769 6.7
72 7z8g:A 3047 66 0.0734 0.0069 0.3182 6.9 8fdu:A, 7z8l:f
73 8eey:A 1544 65 0.0629 0.0117 0.2769 7.0 7yna:A, 7ynb:A, 7ync:A
74 7yn9:A 1514 65 0.0629 0.0119 0.2769 7.2
75 8jxj:A 570 22 0.0420 0.0211 0.5455 7.8 8jxj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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