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BioLiP
>protein
IPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTW

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hap:C 76 41 0.9756 0.5263 0.9756 9.94e-26 2hap:D, 1hwt:C, 1hwt:D, 1hwt:G, 1hwt:H, 1pyc:A, 1qp9:A, 1qp9:B, 1qp9:C, 1qp9:D
2 6gys:B 579 30 0.3415 0.0242 0.4667 1.57e-04 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
3 1aw6:A 43 29 0.3171 0.3023 0.4483 0.010
4 3coq:A 89 26 0.2927 0.1348 0.4615 0.020 3coq:B, 1d66:A, 1d66:B, 7uik:T, 7uik:U, 7uio:GA, 7uio:GB
5 1pyi:A 88 27 0.2927 0.1364 0.4444 0.091 1pyi:B
6 1ajy:A 71 38 0.3415 0.1972 0.3684 0.17 1ajy:B, 1zme:C, 1zme:D
7 1cld:A 33 27 0.2927 0.3636 0.4444 0.28
8 2csh:A 110 27 0.2683 0.1000 0.4074 2.6
9 8i9r:Cg 233 35 0.2683 0.0472 0.3143 2.9 8i9t:Cg
10 6dgd:A 704 19 0.2195 0.0128 0.4737 4.0 6dgd:B, 4nl4:H
11 8fak:H 643 19 0.2195 0.0140 0.4737 4.2 2d7g:A, 2d7g:B, 2d7g:C, 2d7g:D, 2d7h:A, 6dcr:A, 2dwl:A, 2dwl:B, 2dwl:C, 2dwl:D, 2dwm:A, 2dwm:C, 2dwm:D, 2dwn:A, 2dwn:C
12 6dcr:B 600 19 0.2195 0.0150 0.4737 4.3
13 4nl8:E 571 19 0.2195 0.0158 0.4737 4.5 4nl8:B
14 4nl8:A 549 19 0.2195 0.0164 0.4737 5.0
15 1kea:A 217 25 0.2195 0.0415 0.3600 5.3
16 1dot:A 686 20 0.2195 0.0131 0.4500 6.1 1gv8:A, 1gvc:A, 1ovb:A
17 2cuq:A 80 26 0.2195 0.1125 0.3462 6.8
18 2dkc:A 536 15 0.2195 0.0168 0.6000 6.8 2dkc:B, 2dkd:A, 2dkd:B
19 6sei:A 276 30 0.2439 0.0362 0.3333 7.9 6sei:C
20 4xo4:A 870 18 0.1463 0.0069 0.3333 8.1 3b2p:A, 3b2x:A, 3b34:A, 3b37:A, 3b3b:A, 2dq6:A, 2dqm:A, 6g8b:A, 2hpo:A, 2hpt:A, 3ked:A, 5mfr:A, 5mfs:A, 5mft:A, 3puu:A, 4q4e:A, 4q4i:A, 3qjx:A, 4xmt:A, 4xmu:A, 4xmv:A, 4xmw:A, 4xmx:A, 4xmz:A, 4xn1:A, 4xn2:A, 4xn4:A, 4xn5:A, 4xn7:A, 4xn8:A, 4xn9:A, 4xna:A, 4xnb:A, 4xnd:A, 4xo3:A, 4xo5:A, 5yo1:A, 5yq1:A, 5yq2:A, 5yqb:A, 2zxg:A
21 6seh:C 252 30 0.2439 0.0397 0.3333 8.2 6seh:A
22 6o19:A 59 25 0.2927 0.2034 0.4800 9.1 6e33:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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