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BioLiP
>protein
IPKEMLRAQTNVILLNVLKQGDNGIIKQVKEASNGEMELNEATLYTIFDRLEQDGIISRLTEIGHENMRLAFESWSRVDK
IIENLEAN

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7q34:D 88 88 1.0000 1.0000 1.0000 3.49e-60
2 3f8f:A 114 104 0.9773 0.7544 0.8269 1.13e-52 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A
3 4lrj:A 160 46 0.2159 0.1187 0.4130 0.38 4lrj:B
4 5zi8:A 104 59 0.1932 0.1635 0.2881 1.1 7wh4:A, 7wh4:B, 5zhv:A, 5zhv:B, 5zi8:B
5 1hiz:A 375 68 0.2159 0.0507 0.2794 2.1 3mmd:A, 4prw:A, 4pud:A, 4pue:A, 1r85:A, 1r86:A, 1r87:A
6 2eis:A 121 32 0.1364 0.0992 0.3750 3.3 2eis:B
7 4ine:A 431 60 0.1818 0.0371 0.2667 3.6 4ine:B
8 1tn4:A 157 34 0.1591 0.0892 0.4118 3.7 1tcf:A, 2tn4:A
9 8tg3:A 187 22 0.1023 0.0481 0.4091 6.1 8tg4:A
10 3owo:A 382 43 0.1705 0.0393 0.3488 6.4 3owo:B, 3owo:C, 3owo:D, 3ox4:A, 3ox4:B, 3ox4:C, 3ox4:D
11 1z9c:C 138 24 0.1023 0.0652 0.3750 9.8 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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