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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IPGYDYGRVEKSPITDLEFDLLKKTVMLGEKDVMYLKKAGDVLKDQVDEILDLLVGWRASNEHLIYYFSNPDTGEPIKEY
LERVRARFGAWILDTTSRDYNREWLDYQYEVGLRHHRSKKGVTDGVRTVPHIPLRYLIAQIYPLTATIKPFLAKKGGSPE
DIEGMYNAWFKSVVLQVAIWSHPYTKENDW

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ute:A 190 190 1.0000 1.0000 1.0000 7.21e-141 8eum:A, 8eum:B, 8eum:C, 8eum:D, 8eun:A, 8eun:B, 7ute:B, 7ute:C, 7ute:D
2 3zjh:B 193 191 0.5684 0.5596 0.5654 3.61e-77 3qzx:A, 3qzz:A, 3r0g:A, 3r0g:B, 2veb:A, 2vee:A, 2vee:B, 2vee:C, 2vee:D, 2vee:E, 2vee:F, 2vee:G, 2vee:H, 3zh0:A, 3zh0:B, 3zh0:C, 3zh0:D, 3zjh:A, 3zji:A, 3zji:B, 3zjj:A, 3zjj:B, 3zjj:C, 3zjl:A, 3zjl:B, 3zjm:A, 3zjm:B, 3zjm:C, 3zjn:A, 3zjn:B, 3zjo:A, 3zjo:B, 3zjp:A, 3zjq:A, 3zjq:B, 3zjr:A, 3zjs:A, 3zjs:B, 3zol:A, 3zol:B, 3zom:A, 3zom:B
3 6thh:C 816 64 0.1053 0.0245 0.3125 0.079 6yes:A
4 8ftp:A 243 50 0.1053 0.0823 0.4000 0.10 8ftp:B, 8tav:A
5 1rgq:B 186 29 0.0579 0.0591 0.3793 3.4 2o8m:A
6 6et3:B 275 63 0.0947 0.0655 0.2857 3.8
7 3q87:A 122 67 0.0947 0.1475 0.2687 4.6
8 7mq8:SP 1993 53 0.0895 0.0085 0.3208 5.7 7mq9:SP
9 7mqa:SP 2485 53 0.0895 0.0068 0.3208 5.9
10 4fi1:A 371 112 0.1684 0.0863 0.2857 6.7 4jqe:A, 4jr7:A, 4lfi:A, 4lfi:B, 4mwh:A
11 1y9g:A 517 26 0.0579 0.0213 0.4231 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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