Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANV
PLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREM
KQNDDILKVLFKEFIEISLWGTLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADREIRVDFVLDNSGFELYADL
MLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFRE
DSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKA
DVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI

The query sequence (length=444) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5by0:A 465 461 1.0000 0.9548 0.9631 0.0 5f13:A, 5f13:B, 5f13:C, 3pt1:A
2 7u1x:A 439 455 0.3784 0.3827 0.3692 2.74e-86 7t7k:B, 7t7k:A, 7t7o:B, 7t7o:A, 7u1v:A, 7u1v:B, 7u1x:B, 7u1y:A
3 7t7n:B 440 457 0.3716 0.3750 0.3611 1.82e-81 8tkz:B
4 6umq:A 415 455 0.3063 0.3277 0.2989 1.59e-53 6umq:B
5 5z8y:A 328 177 0.0923 0.1250 0.2316 2.1 5z8y:E, 5z8y:C, 5z8y:G
6 3veb:B 150 140 0.0676 0.2000 0.2143 3.1 3vea:B, 3vea:A, 3veb:A
7 5w71:A 413 64 0.0428 0.0460 0.2969 3.5 2c7t:A, 2c81:A, 5w71:B
8 2aj8:A 728 66 0.0383 0.0234 0.2576 8.7 2aj8:B, 2aj8:C, 2aj8:D, 2ajb:A, 2ajb:B, 2ajb:C, 2ajb:D, 2ajc:A, 2ajc:B, 2ajc:C, 2ajc:D, 2ajd:A, 2ajd:B, 2ajd:C, 2ajd:D, 2bua:A, 2bua:B, 2bua:C, 2bua:D, 2buc:A, 2buc:B, 2buc:C, 2buc:D, 5lls:A, 5lls:B, 5lls:D, 5lls:C, 1orw:A, 1orw:B, 1orw:C, 1orw:D, 7xnm:B, 7xnm:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218