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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
INRVVQLLIISYFVGWVFLHEKAYQVRDTAIESSVVTKVKGSGLYANRVMDVSDYVTPPQGTSVFVIITKMIVTENQMQG
FCPESEEKYRCVSDSQCGPERGGGILTGRCVNYSSVLRTCEIQGWCPTEVDTVETPIMMEAENFTIFIKNSIRFPLFNFE
KGNLLPNLTARDMKTCRFHPDKDPFCPILRVGDVVKFAGQDFAKLARTGGVLGIKIGWVCDLDKAWDQCIPKYSFTRLDS
VSEKSSVSPGYNFRFAKYYKMENGSEYRTLLKAFGIRFDVLVYGNAGKFNIIPTIISSVAAFTSVGVGTVLCDIILLN

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ah4:B 357 320 1.0000 0.8908 0.9938 0.0 6ah4:C, 6ah4:A, 6ah5:C, 6ah5:A, 6ah5:B, 9ik1:A, 9ik1:B, 9ik1:C, 5svk:A, 5svk:B, 5svl:A, 5svl:B, 5svm:A, 5svm:B, 5svp:A, 5svp:B, 5svq:A, 5svr:A, 5yve:A
2 4dw1:A 324 325 0.4843 0.4753 0.4738 3.83e-105 8jv5:A, 8jv5:B, 8jv5:C, 8jv6:A, 8jv6:B, 8jv6:C, 5wzy:A
3 5u1x:A 321 327 0.4403 0.4361 0.4281 7.72e-80 8jv7:A, 8jv7:B, 8jv7:C, 8jv8:A, 8jv8:B, 8jv8:C, 5u1u:A, 5u1y:A
4 5f1c:B 355 351 0.4308 0.3859 0.3903 2.54e-79 5f1c:A, 5f1c:C
5 6u9w:A 562 336 0.4371 0.2473 0.4137 4.48e-76 8tr5:A, 8tr5:B, 8tr5:C, 8trj:A, 8trj:C, 8trj:B, 6u9v:A, 6u9v:B, 6u9v:C, 6u9w:B, 6u9w:C, 8v4s:A, 8v4s:B, 8v4s:C
6 5xw6:C 320 313 0.3742 0.3719 0.3802 3.20e-72 5xw6:B, 5xw6:A
7 8pm2:R 261 71 0.0629 0.0766 0.2817 1.6
8 7k9y:A 425 150 0.1038 0.0776 0.2200 2.7 6ar1:A, 6ar1:D, 6ar3:A, 6ar3:D, 7k9y:D
9 1cw0:A 155 32 0.0472 0.0968 0.4688 8.1 1odg:A, 1vsr:A
10 6g1g:A 211 31 0.0314 0.0474 0.3226 9.1 6g1i:A, 6g1i:B, 2xqo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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