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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTD
ITLDNIEFDFGKDVRDIVDGVTKLGKVESKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRI
KWELEDLAFRYLNETEFYKISHMMNEKLVDDIVTKIKSYTTEQGLFGDVYGRPKHIYSIYRKMRIFDLIAIRCVMETQSD
VYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGPIEIQIRTKEMHQVAEYGVAWIKELVE

The query sequence (length=310) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vj7:A 326 331 0.9710 0.9233 0.9094 0.0 1vj7:B
2 6yxa:A 536 355 0.6226 0.3601 0.5437 6.11e-129 8acu:A, 8acu:B
3 7oiw:A 327 320 0.5419 0.5138 0.5250 1.33e-114 7oiw:B
4 7ohg:A 351 347 0.4806 0.4245 0.4294 1.27e-92 6s2t:A, 6s2u:A, 6s2v:A
5 6s2v:C 336 327 0.4710 0.4345 0.4465 5.96e-92 6s2v:B
6 5xnx:D 321 313 0.4387 0.4237 0.4345 1.45e-83 5xnx:C
7 5l3p:z 545 281 0.3484 0.1982 0.3843 7.87e-62
8 5kpv:33 675 298 0.3548 0.1630 0.3691 1.77e-59 5kps:A, 5kpw:33, 5kpx:33
9 5iqr:8 615 293 0.3484 0.1756 0.3686 1.11e-58
10 7qpr:D 689 322 0.3452 0.1553 0.3323 2.62e-41 7qpr:A, 7qpr:B, 7qpr:C, 7qps:A
11 7qps:B 303 309 0.2968 0.3036 0.2977 4.46e-28
12 3nr1:A 178 128 0.1806 0.3146 0.4375 6.74e-19 3nr1:B, 5vxa:A, 5vxa:B
13 7qoe:A 187 119 0.1581 0.2620 0.4118 3.07e-13
14 3nqw:A 178 122 0.1484 0.2584 0.3770 2.90e-11 3nqw:B
15 7qoc:A 193 123 0.1226 0.1969 0.3089 1.60e-10 7qoc:B, 7qod:A, 7qod:B
16 7smg:B 144 84 0.0935 0.2014 0.3452 3.07e-06 7smg:A, 7smg:C, 7smg:D
17 6ewz:A 202 78 0.0903 0.1386 0.3590 2.97e-05 6ewz:B, 6ex0:A, 6ex0:B, 6fgx:A, 6fgx:B
18 6z3o:AAA 178 150 0.1290 0.2247 0.2667 0.008 6yvc:A, 6yvc:B, 6yvc:C, 6yvc:D, 6z3o:BBB, 6z3o:CCC, 6z3o:DDD
19 8otz:EV 425 120 0.1000 0.0729 0.2583 0.018
20 7rro:D6 319 121 0.1000 0.0972 0.2562 0.031
21 7p1y:AAA 174 119 0.0935 0.1667 0.2437 1.4 7p1y:BBB, 7p1y:DDD, 7p1y:CCC
22 5ded:A 196 44 0.0581 0.0918 0.4091 1.7 5ded:D, 5ded:B, 5ded:C, 5ded:E, 5ded:F, 5ded:G, 5ded:H, 5f2v:V, 5f2v:X, 5f2v:T, 5f2v:S, 5f2v:Y, 5f2v:O, 5f2v:Z, 5f2v:W, 5f2v:U, 5f2v:P, 5f2v:R, 5f2v:Q
23 3rc1:A 325 113 0.0871 0.0831 0.2389 2.1 3rbv:A, 3rc2:A, 3rc7:A, 3rc9:A, 3rcb:A
24 8f29:D 473 38 0.0516 0.0338 0.4211 3.2 4b2q:D, 4b2q:F, 4b2q:d, 4b2q:f, 6b8h:D, 6b8h:F, 6b8h:Y, 6b8h:c, 6cp3:D, 6cp3:F, 6cp6:D, 6cp6:F, 8f29:F, 8f2k:E, 8f2k:F, 8f39:E, 8f39:F, 8fl8:E, 8fl8:F, 2hld:D, 2hld:F, 2hld:M, 2hld:N, 2hld:O, 2hld:V, 2hld:X, 5lqx:D, 5lqx:E, 5lqx:F, 5lqy:D, 5lqy:E, 5lqy:F, 5lqz:D, 5lqz:E, 5lqz:F, 7md2:D, 7md3:D, 3oe7:D, 3oe7:F, 3oe7:M, 3oe7:N, 3oe7:O, 3oe7:V, 3oe7:X, 3oee:D, 3oee:F, 3oee:M, 3oee:O, 3oee:V, 3oee:X, 3oeh:D, 3oeh:F, 3oeh:M, 3oeh:O, 3oeh:V, 3oeh:X, 3ofn:D, 3ofn:F, 3ofn:M, 3ofn:O, 3ofn:V, 3ofn:X, 7tjs:D, 7tju:D, 7tju:E, 7tjv:D, 7tjv:F, 7tjw:D, 7tjw:F, 7tjx:D, 7tjx:F, 2wpd:D, 2wpd:F, 2xok:D, 2xok:F, 3zia:D, 3zia:E, 3zia:F, 3zia:N, 3zia:O, 3zia:P, 3zry:D, 3zry:F
25 6eac:A 476 68 0.0548 0.0357 0.2500 4.8 6eac:B, 6eac:C, 6eac:D
26 8c9h:A 253 62 0.0548 0.0672 0.2742 9.1 8c9h:B, 8c9h:C, 8c9h:D, 8c9h:E, 8c9h:F, 8c9h:G, 8c9h:H, 6n1g:A, 6n1g:C, 6n1g:B, 6n1g:D, 6qzi:A, 6qzj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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