Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
INIRKTHPLMKIVNNAFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRY
MHANGASMFFICLFMHVGRGLYYGSYTFLETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLV
EWIWGGFSVDKATLTRFFAFHFISPFIIAALAMVHLLFLHETGSNNPTGIPSDTDKIPFHPYYTIKDILGAILLILILML
LVLFTPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILVLVLMPLLHTSKQRSMMFRPIS
QCMFWILVADLLTLTWIGGQPVEHPYIIIGQLASIMYILLIMVMMPVASIIENNLLKW

The query sequence (length=378) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1be3:C 379 377 0.9127 0.9103 0.9151 0.0 2a06:C, 2a06:P, 1bgy:C, 1bgy:O, 4d6t:C, 4d6t:P, 4d6u:C, 4d6u:P, 7dgq:m, 7dgq:y, 7dgr:m, 7dgr:y, 7dgs:m, 7dgs:y, 7dkf:C1, 7dkf:O1, 6fo0:P, 6fo0:C, 6fo2:P, 6fo2:C, 6fo6:C, 6fo6:P, 2fyu:C, 5gpn:C, 5gpn:O, 5gup:w, 5gup:7, 6haw:C, 8iog:A, 8iog:a, 5j4z:AC, 5j4z:AN, 5j7y:AC, 5j7y:AN, 5j8k:AC, 5j8k:AN, 5klv:C, 1l0l:C, 1l0n:C, 5luf:b, 5luf:o, 6nhg:C, 5nmi:C, 5nmi:P, 1ntk:C, 1ntm:C, 1ntz:C, 1nu1:C, 5okd:C, 8p65:C, 8p65:P, 1pp9:C, 1pp9:P, 1ppj:C, 1ppj:P, 6q9e:b1, 6q9e:b2, 6qbx:b1, 6qbx:b2, 1qcr:C, 6qc2:b1, 6qc2:b2, 6qc3:b1, 6qc3:b2, 6qc4:b1, 6qc4:b2, 7r3v:C, 1sqb:C, 1sqp:C, 1sqq:C, 1sqv:C, 1sqx:C, 7tay:C, 7tz6:C, 7tz6:P, 8ugd:3C, 8ugd:3P, 8uge:3C, 8uge:3P, 8ugf:3C, 8ugf:3P, 8ugg:3C, 8ugg:3P, 8ugh:3C, 8ugh:3P, 8ugi:3C, 8ugi:3P, 8ugj:3C, 8ugj:3P, 8ugk:3C, 8ugk:3P, 8ugn:3C, 8ugn:3P, 8ugr:3C, 8ugr:3P, 8ugr:6C, 8ugr:6P, 6xvf:C, 2ybb:C, 2ybb:c, 6zfs:C, 6zft:C, 6zfu:C
2 7o37:C 380 376 0.8492 0.8447 0.8537 0.0 8iao:AC, 8iao:Ac, 8iar:AC, 8iar:Ac, 8ib4:AC, 8ib4:Ac, 8ib7:AC, 8ib7:Ac, 8ib9:AC, 8ib9:Ac, 8ibc:AC, 8ibc:Ac, 8ibd:AC, 8ibd:Ac, 8ibg:AC, 8ibg:Ac, 8ic2:AC, 8ic2:Ac, 8ic5:AC, 8ic5:Ac, 7o37:N, 7o3c:C, 7o3c:N, 7o3e:C, 7o3e:N, 7o3h:C, 7o3h:N, 8pw5:C, 8pw5:N, 8pw6:C, 8pw6:N, 8pw7:C, 8pw7:N
3 5xte:J 378 376 0.7725 0.7725 0.7766 0.0 5xte:V, 5xth:AJ, 5xth:AV, 5xti:AJ, 5xti:AV
4 3cwb:C 380 377 0.7090 0.7053 0.7109 0.0 1bcc:C, 2bcc:C, 3bcc:C, 3cwb:P, 3h1h:C, 3h1h:P, 3h1i:C, 3h1i:P, 3h1j:C, 3h1j:P, 3h1k:C, 3h1k:P, 3h1l:C, 3h1l:P, 3l70:C, 3l70:P, 3l71:C, 3l71:P, 3l72:C, 3l72:P, 3l73:C, 3l73:P, 3l74:C, 3l74:P, 3l75:C, 3l75:P, 3tgu:C, 3tgu:P, 4u3f:C, 4u3f:P
5 7jrg:C 388 360 0.5132 0.5000 0.5389 2.41e-142 8bel:C, 8bel:M, 8bpx:AC, 8bpx:BC, 8bq5:AC, 8bq5:BC, 8bq6:AC, 8bq6:BC, 8e73:C, 8e73:O, 7jrg:O, 7jrp:C, 7jrp:O
6 7rje:K 384 372 0.5185 0.5104 0.5269 5.03e-140 7rja:K, 7rja:T, 7rjb:K, 7rjc:K, 7rjd:K, 7rje:T
7 8ab6:C 383 373 0.5000 0.4935 0.5067 5.57e-135 8ab6:N, 8ab7:C, 8ab7:N, 8ab8:C, 8ab8:N, 8ab9:C, 8ab9:N, 8aba:C, 8aba:N, 8abb:C, 8abb:N, 8abe:C, 8abe:N, 8abf:C, 8abf:N, 8abg:C, 8abg:N, 8abh:C, 8abh:N, 8abi:C, 8abi:N, 8abj:C, 8abj:N, 8abk:C, 8abk:N, 8abl:C, 8abl:N, 8abm:C, 8abm:N, 8ac3:C, 8ac3:N, 8ac4:C, 8ac4:N, 8ac5:C, 8ac5:N
8 3cx5:C 385 374 0.5159 0.5065 0.5214 1.25e-130 3cx5:N, 3cxh:C, 3cxh:N, 8e7s:J, 8e7s:j, 8ec0:J, 8ec0:j, 1ezv:C, 6giq:C, 6giq:N, 6hu9:C, 6hu9:N, 2ibz:C, 1kb9:C, 1kyo:C, 1kyo:N, 1p84:C, 4pd4:C, 6t0b:C, 6t0b:N, 6t15:C, 6t15:N, 6ymx:C, 6ymx:N
9 8q1b:C 387 379 0.5132 0.5013 0.5119 5.86e-126 8q1b:N
10 8asi:B 433 397 0.5026 0.4388 0.4786 7.58e-122 8asi:F, 8asj:B, 8asj:F, 2fyn:A, 2fyn:D, 2fyn:G, 2fyn:J, 2fyn:M, 2fyn:P, 5kkz:A, 5kkz:E, 5kkz:K, 5kkz:O, 5kli:A, 5kli:E, 5kli:K, 5kli:O, 6nhh:A, 6nhh:E, 6nin:A, 6nin:E, 6nin:K, 6nin:O, 6nin:S, 6nin:W, 2qjk:A, 2qjk:D, 2qjk:G, 2qjk:J, 2qjk:M, 2qjk:P, 2qjp:A, 2qjp:D, 2qjp:G, 2qjp:J, 2qjy:A, 2qjy:D, 2qjy:G, 2qjy:J, 2qjy:M, 2qjy:P, 7tce:A, 7tce:E, 7tce:K, 7tce:O, 7tlj:A, 7tlj:E
11 1zrt:C 431 394 0.4894 0.4292 0.4695 2.33e-120 6xi0:C, 6xi0:P, 6xkt:C, 6xkt:P, 6xku:C, 6xku:P, 6xkv:C, 6xkv:P, 6xkw:C, 6xkw:P, 6xkx:C, 6xkx:P, 6xkz:C, 6xkz:P, 1zrt:P
12 2yiu:A 428 381 0.4656 0.4112 0.4619 5.65e-115 2yiu:D
13 8smr:I 403 388 0.4206 0.3945 0.4098 6.52e-97 8smr:D, 8snh:I, 8snh:D
14 6kls:B 395 388 0.3386 0.3241 0.3299 8.84e-59 6kls:E, 6klv:B, 6klv:E
15 8iuf:QC 364 277 0.2778 0.2885 0.3791 5.60e-55 8iuf:Qc, 8iuj:QC, 8iuj:Qc
16 7r0w:I 222 188 0.1772 0.3018 0.3564 2.54e-35 7r0w:A, 7zxy:A, 7zxy:I
17 1q90:B 212 188 0.1720 0.3066 0.3457 7.05e-35
18 6rqf:I 215 188 0.1746 0.3070 0.3511 8.22e-35 7qrm:I, 7qrm:A, 6rqf:A, 7zyv:I, 7zyv:A
19 2e74:A 215 188 0.1640 0.2884 0.3298 3.79e-32 2d2c:A, 2d2c:N, 2e75:A, 2e76:A, 4h0l:A, 4h13:A, 4h44:A, 4i7z:A, 4ogq:A, 4pv1:A, 1vf5:A, 1vf5:N, 2zt9:A
20 7q21:b 534 280 0.1905 0.1348 0.2571 3.29e-14 7q21:B, 7qhm:B, 7qhm:O, 7qho:B, 7qho:O
21 8b6j:C 426 321 0.1958 0.1737 0.2305 5.54e-14 8b6j:c, 8bqs:C, 8bqs:c, 8gym:qc, 8gym:qC, 8gym:QC, 8gym:Qc, 8gzu:qC, 8gzu:qc, 8gzu:QC, 8gzu:Qc, 7tgh:3C, 7tgh:3c
22 6hwh:b 536 278 0.1720 0.1213 0.2338 7.09e-09 6adq:B, 6adq:N, 6hwh:Y, 8ovc:H, 8ovc:N, 8ovd:N, 8ovd:H, 7rh5:E, 7rh5:F, 7rh6:F, 7rh6:E, 7rh7:E, 7rh7:F
23 2e74:B 160 112 0.1085 0.2562 0.3661 7.74e-09 2d2c:B, 2d2c:O, 2e75:B, 2e76:B, 4h0l:B, 4h13:B, 4h44:B, 4i7z:B, 4ogq:B, 4pv1:B, 1vf5:B, 1vf5:O, 2zt9:B
24 6rqf:J 160 99 0.0952 0.2250 0.3636 8.44e-09 7qrm:B, 7qrm:J, 6rqf:B, 7zyv:J, 7zyv:B
25 1q90:D 156 83 0.0847 0.2051 0.3855 3.57e-08
26 7e1v:N 524 281 0.1746 0.1260 0.2349 6.16e-08 7e1v:B, 7e1w:N, 7e1w:B, 7e1x:N, 7e1x:B, 8hcr:B, 8hcr:N
27 7r0w:J 159 98 0.0979 0.2327 0.3776 8.41e-08 7r0w:B, 7zxy:B, 7zxy:J
28 3gzk:A 531 64 0.0529 0.0377 0.3125 0.90 5e2j:A, 5e2j:B, 3ez8:A, 3h2w:A, 3h3k:A, 3rx5:A, 3rx7:A, 3rx8:A
29 3up0:A 242 43 0.0423 0.0661 0.3721 4.2 3up0:B, 3up3:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218