Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
INIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESEGKQQLIYKHAISTFAPQKNVQLEL

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hsb:B 69 69 1.0000 1.0000 1.0000 3.57e-45 3ahu:A, 3ahu:B, 3ahu:C, 3hsb:A, 3hsb:C, 3hsb:D, 3hsb:F
2 4nl3:F 75 65 0.6812 0.6267 0.7231 1.71e-29 4nl3:D, 4nl3:A, 4nl3:B, 4nl3:J, 4nl3:G, 4nl3:H, 4nl3:C, 4nl3:E, 4nl3:I, 4nl3:K, 4nl3:L
3 4y91:F 73 64 0.5072 0.4795 0.5469 3.48e-20 4y91:G, 4y91:H, 4y91:I, 4y91:J, 4y91:K, 4y91:L, 4y91:A, 4y91:B, 4y91:C, 4y91:D, 4y91:E
4 5sze:A 71 67 0.4348 0.4225 0.4478 7.93e-19
5 1kq2:H 62 61 0.4638 0.5161 0.5246 6.75e-18 1kq2:A, 1kq2:B, 1kq2:I, 1kq2:K, 1kq2:M, 3qsu:A, 3qsu:B, 3qsu:H, 3qsu:C, 3qsu:E, 3qsu:F, 3qsu:D, 3qsu:S
6 4v2s:A 71 64 0.4203 0.4085 0.4531 3.08e-17 7ogm:D, 4v2s:B, 4v2s:C, 4v2s:D, 4v2s:E, 4v2s:F, 2ylc:A
7 3m4g:F 71 67 0.4203 0.4085 0.4328 7.17e-17 8bvh:w, 8bvh:x, 8bvh:D, 8bvh:E, 8bvh:F, 8bvh:R, 8bvh:T, 8bvh:J, 8bvh:L, 8bvh:N, 8bvh:P, 8bvh:S, 8bvh:U, 8bvh:K, 8bvh:M, 8bvh:O, 8bvh:Q, 8bvj:R, 8bvj:L, 8bvj:N, 8bvj:P, 8bvj:X, 8bvj:Y, 8bvj:S, 8bvj:U, 8bvj:W, 8bvj:K, 8bvj:M, 8bvj:D, 8bvj:F, 8bvj:I, 8bvm:B, 8bvm:C, 8bvm:D, 8bvm:E, 8bvm:F, 8bvm:G, 8bvm:I, 8bvm:J, 8bvm:K, 8bvm:L, 8bvm:O, 3gib:A, 3gib:B, 3gib:C, 4ht8:A, 4ht8:B, 4ht8:E, 4ht8:F, 4ht8:C, 4ht8:D, 4ht9:A, 4ht9:B, 4ht9:C, 4j5y:A, 4j5y:F, 4j5y:B, 4j5y:C, 4j5y:D, 4j5y:E, 4j6w:A, 4j6w:E, 4j6w:B, 4j6w:C, 4j6w:F, 4j6w:D, 4j6x:A, 4j6x:B, 4j6x:C, 4j6x:D, 4j6x:E, 4j6x:F, 3m4g:A, 3m4g:C, 3m4g:E, 3m4g:G, 3m4g:I, 3m4g:K, 3m4g:L, 4mmk:A, 4mmk:E, 4mmk:K, 4mml:A, 5new:A, 5new:B, 6o1k:I, 6o1k:J, 6o1k:K, 6o1k:L, 6o1k:M, 6o1k:N, 6o1k:C, 6o1k:D, 6o1k:E, 6o1k:F, 6o1k:G, 6o1k:H, 6o1l:I, 6o1l:J, 6o1l:K, 6o1l:L, 6o1l:M, 6o1l:N, 6o1l:C, 6o1l:D, 6o1l:E, 6o1l:F, 6o1l:G, 6o1l:H, 6o1m:I, 6o1m:J, 6o1m:K, 6o1m:L, 6o1m:M, 6o1m:N, 6o1m:C, 6o1m:D, 6o1m:E, 6o1m:F, 6o1m:G, 6o1m:H, 7ogm:K, 7ogm:J, 7ogm:I, 7ogm:E, 7ogm:F, 4pno:A, 3qo3:A, 3qo3:B, 3qo3:C, 3qo3:D, 3qo3:E, 3qui:A, 3qui:F, 3qui:B, 3qui:C, 3qui:D, 3qui:E, 4qvc:D, 4qvd:D, 4qvd:E, 3rer:A, 3rer:B, 3rer:C, 3rer:D, 3rer:E, 3rer:F, 3res:B, 3res:C, 3res:E, 3res:F, 3res:H, 3res:I, 3res:J, 3res:K, 3res:L, 3res:G, 5uk7:C
8 5dy9:E 60 41 0.2174 0.2500 0.3659 2.94e-04 5dy9:A, 5dy9:F, 5dy9:D, 5dy9:G, 5dy9:L, 4x9d:A, 4x9d:F, 4x9d:B, 4x9d:C, 4x9d:D, 4x9d:E
9 3jb9:H 76 44 0.1739 0.1579 0.2727 1.1 3jb9:m
10 1s49:A 588 61 0.2609 0.0306 0.2951 2.1
11 4rnh:A 423 23 0.1594 0.0260 0.4783 3.4
12 8y6o:q 104 31 0.1884 0.1250 0.4194 8.4 7a5p:h, 7abg:a, 7abi:a, 6ah0:k, 6ah0:P, 6ahd:P, 6ahd:k, 8ch6:l, 8ch6:4, 7dvq:k, 8h6e:2c, 8h6j:2c, 8h6k:4c, 8h6k:2c, 8h6l:4c, 8h6l:2c, 8i0w:k, 6id0:k, 6id1:k, 5o9z:h, 5o9z:a, 4pjo:R, 7qtt:l, 8qzs:42, 7w59:k, 7w5a:k, 7w5b:k, 5xjc:k, 8y7e:k, 5yzg:k, 5z56:k, 5z57:k, 5z58:k
13 1m8v:A 72 25 0.1449 0.1389 0.4000 9.3 1m8v:M, 1m8v:C, 1m8v:K, 1m8v:F, 1m8v:H, 1m8v:E, 1m8v:I, 1m8v:D, 1m8v:J, 1m8v:B, 1m8v:L, 1m8v:G, 1m8v:N

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218