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BioLiP
>protein
INGSKRIAQPIRWAMVGGGRNSQIGYIHRSAALRDQSFALVAGAFDIDPGRGREFGVQLGVDPQRCYPDYRTLFEQEARR
PDGIQAVSVATPNGTHFAITRAALEAGLHVVCEKPLCFTLEEAETLREIALANNRVVGVTYGYAGHQLIEQARAMIADGE
LGEIRMVHMQFAHGFHSAPVEGQNEATKWRVDPRLAGPSYVLGDVGTHPLYLSEVMLPEFRIKRLMCSRQSFVKSRAPLE
DNAYTLMEYEGGAMGLVWSSAVNAGSMHGQKIRVIGSRASLEWWDEHPNQLAFEIQGQPVQVLERGMGYLHPGALLDDRI
GAGHPEGLFEAWSNLYYRFAMAMDATERGDGALLAGLRYPDIHAGVEGVRWVERCVQSADRGGVWVDYL

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7d5m:A 389 388 0.9974 0.9974 1.0000 0.0 7d5n:A, 7d5n:B
2 3dty:A 374 384 0.7686 0.7995 0.7786 0.0 3dty:E
3 6jw7:A 342 281 0.2031 0.2310 0.2811 8.17e-15 6jw6:A, 6jw6:B, 6jw7:B, 6jw8:A, 6jw8:B
4 6a3j:C 378 240 0.1594 0.1640 0.2583 7.17e-14 6a3g:A, 6a3g:B, 6a3g:C, 6a3g:D, 6a3i:A, 6a3i:B, 6a3i:C, 6a3i:D, 6a3j:A, 6a3j:B, 6a3j:D
5 1h6d:A 383 185 0.1337 0.1358 0.2811 3.70e-12 1evj:A, 1evj:B, 1evj:C, 1evj:D, 1h6a:A, 1h6a:B, 1h6b:A, 1h6b:B, 1h6c:A, 1h6c:B, 1h6d:C, 1h6d:B, 1h6d:D, 1h6d:E, 1h6d:G, 1h6d:F, 1h6d:H, 1h6d:I, 1h6d:K, 1h6d:J, 1h6d:L, 1ofg:A, 1ofg:D, 1ofg:B, 1ofg:C, 1ofg:E, 1ofg:F, 1ryd:A, 1ryd:B, 1rye:A, 1rye:D, 1rye:B, 1rye:C
6 5a03:C 336 263 0.1825 0.2113 0.2700 1.58e-10 5a02:A, 5a02:B, 5a02:C, 5a02:D, 5a02:E, 5a02:F, 5a03:A, 5a03:B, 5a03:D, 5a03:E, 5a03:F, 5a04:A, 5a04:B, 5a04:C, 5a04:D, 5a04:E, 5a04:F, 5a05:A, 5a05:C, 5a05:D, 5a05:E, 5a05:B, 5a05:F, 5a06:A, 5a06:B, 5a06:C, 5a06:D, 5a06:E, 5a06:F
7 8qc8:D 339 275 0.1825 0.2094 0.2582 2.16e-10
8 8qc8:B 367 286 0.1877 0.1989 0.2552 4.08e-10 8qc2:A, 8qc2:B, 8qc2:C, 8qc2:D, 8qc8:C, 8qc8:A
9 5uhw:A 342 232 0.1465 0.1667 0.2457 5.27e-10 5uhw:B, 5uhz:A, 5uhz:B, 5ui9:A, 5ui9:B, 5uia:A, 5uia:B, 5uib:A, 5uib:B
10 7xre:C 363 137 0.1054 0.1129 0.2993 1.43e-09 7xr9:A, 7xr9:B, 7xr9:C, 7xr9:D, 7xr9:E, 7xr9:F, 7xre:A, 7xre:B, 7xre:D, 7xre:E, 7xre:F
11 3e18:A 348 95 0.0900 0.1006 0.3684 5.64e-09 3e18:B
12 3cea:A 342 206 0.1337 0.1520 0.2524 1.08e-08 3cea:B, 3cea:C, 3cea:D
13 8tdf:A 452 103 0.0900 0.0774 0.3398 1.58e-08 8tdf:B, 8tdf:C, 8tdf:D, 8tdh:B, 8tdh:C, 8tdh:D, 8tdh:A
14 3m2t:A 342 90 0.0848 0.0965 0.3667 3.60e-08 3m2t:B
15 7bvj:A 313 130 0.0977 0.1214 0.2923 5.33e-08 7bvj:B, 7bvj:C, 7bvj:D, 7bvk:A, 7bvk:B
16 2glx:A 332 189 0.1517 0.1777 0.3122 8.21e-08 2glx:B, 2glx:C, 2glx:D, 2glx:E, 2glx:F
17 6nor:A 349 204 0.1568 0.1748 0.2990 9.63e-08 6nor:B, 6nor:C, 6nor:D, 6nor:E, 6nor:F
18 6ktk:C 368 95 0.0848 0.0897 0.3474 1.37e-07 6ktk:A, 6ktk:B, 6ktk:D, 6ktl:A, 6ktl:B, 6ktl:C, 6ktl:D, 5ya8:A, 5ya8:B, 5ya8:C, 5ya8:D, 5yap:A, 5yap:B, 5yap:C, 5yap:D, 5yaq:A, 5yaq:B, 5yaq:C, 5yaq:D
19 8qc6:A 366 283 0.1722 0.1831 0.2367 2.52e-07 8qc3:A, 8qc3:B, 8qc5:A, 8qc5:B, 8qc6:B
20 6z3c:AAA 379 166 0.1131 0.1161 0.2651 4.86e-07 6z3b:A, 6z3b:B, 6z3c:BBB
21 8tdi:G 386 119 0.0925 0.0933 0.3025 1.12e-06 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
22 3rc1:A 325 171 0.1234 0.1477 0.2807 1.51e-06 3rbv:A, 3rc2:A, 3rc7:A, 3rc9:A, 3rcb:A
23 4koa:A 333 174 0.1157 0.1351 0.2586 3.15e-06
24 4nhe:B 326 100 0.0848 0.1012 0.3300 3.40e-06 4nhe:A, 4nhe:C
25 7x2y:A 342 102 0.0797 0.0906 0.3039 3.80e-06 7x1x:A, 7x1x:B, 7x2y:B
26 5b3u:B 317 175 0.1234 0.1514 0.2743 5.25e-06 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
27 1zh8:A 325 207 0.1080 0.1292 0.2029 7.11e-06 1zh8:B
28 3ec7:A 336 129 0.0900 0.1042 0.2713 2.56e-05 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H
29 7cgq:A 306 93 0.0848 0.1078 0.3548 2.57e-05 7cgq:B, 7cgq:C, 7cgq:D, 7cgr:A, 7cgr:B, 7cgr:C, 7cgr:D, 6jnk:A, 6jnk:B, 6jnk:C, 6jnk:D
30 4n54:A 340 168 0.1105 0.1265 0.2560 3.14e-05 4n54:B, 4n54:C, 4n54:D
31 6o15:A 355 92 0.0746 0.0817 0.3152 1.21e-04 6o15:B
32 3o9z:A 310 68 0.0566 0.0710 0.3235 7.06e-04 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
33 2o4u:X 331 169 0.1028 0.1208 0.2367 0.006 2poq:X
34 4min:A 339 73 0.0643 0.0737 0.3425 0.007 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
35 3q2i:A 345 276 0.1517 0.1710 0.2138 0.008
36 3oa2:B 311 154 0.0977 0.1222 0.2468 0.020 3oa2:A, 3oa2:C, 3oa2:D
37 3q2k:K 322 199 0.1208 0.1460 0.2362 0.048 3q2k:E, 3q2k:L, 3q2k:P
38 1lc3:A 292 69 0.0488 0.0651 0.2754 0.053 1lc0:A
39 3q2k:C 347 199 0.1208 0.1354 0.2362 0.061 3q2k:A, 3q2k:B, 3q2k:D, 3q2k:F, 3q2k:G, 3q2k:H, 3q2k:I, 3q2k:J, 3q2k:M, 3q2k:N, 3q2k:O
40 3pgx:A 270 146 0.0874 0.1259 0.2329 0.58 3pgx:B, 3pgx:C, 3pgx:D
41 4l8v:A 337 182 0.1080 0.1246 0.2308 0.79 4l8v:B, 4l8v:C, 4l8v:D, 3nt2:A, 3nt2:B, 3nt4:A, 3nt4:B, 3nt5:A, 3nt5:B, 3ntq:A, 3ntq:B, 3ntr:A, 3ntr:B
42 2ixa:A 426 106 0.0823 0.0751 0.3019 0.83 2ixb:A
43 2h63:D 285 62 0.0411 0.0561 0.2581 0.85 2h63:A, 2h63:B, 2h63:C
44 9azo:A 315 46 0.0411 0.0508 0.3478 0.90 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
45 6t2b:B 439 105 0.0720 0.0638 0.2667 0.97 6t2b:A, 6t2b:C, 6t2b:D
46 8asw:A 1255 92 0.0643 0.0199 0.2717 1.0
47 8i6y:A 844 104 0.0746 0.0344 0.2788 1.9 8i6y:B
48 1q1w:A 422 143 0.0900 0.0829 0.2448 2.4 3lb8:A, 3lb8:B, 1q1r:A, 1q1r:B, 1q1w:B
49 7s6g:A 275 28 0.0360 0.0509 0.5000 3.2
50 6z1p:AN 96 38 0.0308 0.1250 0.3158 4.1
51 1nfg:A 457 151 0.0746 0.0635 0.1921 7.0 1nfg:B, 1nfg:C, 1nfg:D
52 5u63:B 319 117 0.0823 0.1003 0.2735 7.6 5u63:A
53 3dxa:E 244 53 0.0463 0.0738 0.3396 8.1 3dxa:J, 3dxa:O, 7n1f:E, 7ndq:EEE, 7ndu:EEE, 7nme:E, 7nmf:E, 7nmg:E, 7pbe:E, 7pbe:J, 8qfy:JJJ, 6rsy:E, 6rsy:J, 7rtr:E, 3vxr:E, 3vxs:E
54 6omz:A 274 71 0.0668 0.0949 0.3662 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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