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BioLiP
>protein
INAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQ
AEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSG

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pyd:C 154 143 1.0000 0.9091 0.9790 2.48e-98 4pya:A, 4pyd:A, 4pyd:B, 4pyd:E, 4pyd:D, 4pyd:F
2 3jqj:B 149 139 0.5357 0.5034 0.5396 1.36e-41 3jqj:A, 3jqj:C, 3jqj:D, 3jqj:E, 3jqj:F, 3jqj:G, 3jqj:H, 3jqj:K, 3jqj:I, 3jqj:J, 3jqj:L, 3jqk:A, 3jqm:A, 3jqm:B, 3jqm:E, 3jqm:C, 3jqm:G, 3jqm:D, 3jqm:F, 3jqm:H, 3jqm:I
3 8jez:A 513 30 0.1143 0.0312 0.5333 0.16 8jew:A, 8jf1:A, 7ytw:A, 7ytw:B
4 4aso:A 93 40 0.1071 0.1613 0.3750 0.43 4aso:B, 4aso:D, 4aso:E, 4aso:F, 4aso:G, 4aso:H, 4aso:I, 4aso:K, 4aso:J, 4aso:L, 4aso:M, 4aso:N, 4aso:O, 4aso:P, 4ass:E, 4ass:F, 4ass:G, 4ass:H
5 5b3u:B 317 109 0.2071 0.0915 0.2661 1.8 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
6 8y6o:X 131 62 0.1214 0.1298 0.2742 4.9
7 3kvs:A 161 51 0.1143 0.0994 0.3137 9.7 3brp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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