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BioLiP
>protein
IMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGEDVYISTVFKILDGLGIDIVSAQTSDTETNGW

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pu4:D 78 78 1.0000 1.0000 1.0000 9.80e-53 4pu3:D, 4pu3:C, 4pu4:C
2 1y9q:A 178 48 0.2692 0.1180 0.4375 4.57e-04
3 8tac:B 66 48 0.2051 0.2424 0.3333 0.14
4 5jub:A 298 46 0.2179 0.0570 0.3696 0.37 5jub:B
5 6hua:A 296 46 0.2179 0.0574 0.3696 0.38 6hua:B
6 8ahx:A 189 55 0.1795 0.0741 0.2545 0.77 8rb8:A, 8rb9:A, 8rbm:A, 8rbq:A
7 3cro:L 66 61 0.2308 0.2727 0.2951 2.8 3cro:R
8 5wp4:A 485 48 0.1795 0.0289 0.2917 5.5
9 7ksf:A 742 21 0.1538 0.0162 0.5714 7.5
10 4j1x:C 195 34 0.1538 0.0615 0.3529 7.5 2bnm:A, 2bnm:B, 2bnn:A, 2bnn:B, 2bno:A, 2bno:B, 4j1w:A, 4j1w:B, 4j1w:C, 4j1x:A, 4j1x:B, 3scf:A, 3scf:B, 3scf:C, 3scg:A, 3scg:B, 3scg:C, 3sch:A, 3sch:B, 1zz7:A, 1zz7:B, 1zz8:A, 1zz8:B, 1zz8:C, 1zz9:A, 1zz9:B, 1zz9:C, 1zzb:A, 1zzb:B, 1zzc:A, 1zzc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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