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BioLiP
>protein
IMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGEDVYISTVFKILDGLGIDIVSA

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pu4:D 78 68 1.0000 0.8718 1.0000 3.22e-44 4pu3:D, 4pu3:C, 4pu4:C
2 1y9q:A 178 48 0.3088 0.1180 0.4375 1.75e-04
3 8tac:B 66 48 0.2353 0.2424 0.3333 0.087
4 5jub:A 298 43 0.2206 0.0503 0.3488 0.36 5jub:B
5 6hua:A 296 44 0.2500 0.0574 0.3864 0.44 6hua:B
6 8ahx:A 189 55 0.2059 0.0741 0.2545 0.57 8rb8:A, 8rb9:A, 8rbm:A, 8rbq:A
7 4j1x:C 195 34 0.1765 0.0615 0.3529 2.8 2bnm:A, 2bnm:B, 2bnn:A, 2bnn:B, 2bno:A, 2bno:B, 4j1w:A, 4j1w:B, 4j1w:C, 4j1x:A, 4j1x:B, 3scf:A, 3scf:B, 3scf:C, 3scg:A, 3scg:B, 3scg:C, 3sch:A, 3sch:B, 1zz7:A, 1zz7:B, 1zz8:A, 1zz8:B, 1zz8:C, 1zz9:A, 1zz9:B, 1zz9:C, 1zzb:A, 1zzb:B, 1zzc:A, 1zzc:B
8 5wp4:A 485 48 0.2059 0.0289 0.2917 3.5
9 3cro:L 66 58 0.2500 0.2576 0.2931 3.8 3cro:R
10 7ksf:A 742 21 0.1765 0.0162 0.5714 4.9
11 8agq:A 213 25 0.1324 0.0423 0.3600 8.1 5f07:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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