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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ILRLDRLRQFIGELATLLDSRPDESTLLAQAHPLLAELVHQDDWLPEDCARPDPQRYQQYLLHVDSRQRFSVVSFVWGPG
QITPVHDHRVWCLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDRTSISIHVYGANI
GAVRRAVFSAEGEEKPFISGYSNSRLPNIWDLSKE

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wvz:D 203 195 1.0000 0.9606 1.0000 2.17e-144 4tlf:A, 4tlf:B, 4tlf:C, 4tlf:D, 3uss:A, 3uss:B, 4wvz:A, 4wvz:B, 4wvz:C
2 7kov:B 194 194 0.6923 0.6959 0.6959 2.76e-92 7kov:A, 7kov:C, 7kov:D, 6xb9:A, 6xb9:B, 6xb9:C, 6xb9:D, 6xb9:E, 6xb9:F, 6xb9:G, 6xb9:H, 6xb9:I, 6xb9:J, 6xb9:K, 6xb9:L
3 4qma:A 192 191 0.6256 0.6354 0.6387 8.51e-86
4 6bgf:A 188 109 0.1385 0.1436 0.2477 4.19e-05 2atf:A, 2b5h:A, 6bgm:A, 6bpr:A, 6bps:A, 6bpt:A, 6bpu:A, 6bpv:A, 6bpw:A, 6bpx:A, 6cdh:A, 6cdn:A, 6e87:A, 5efu:A, 3eln:A, 5ezw:A, 2gh2:A, 5i0r:A, 5i0s:A, 5i0t:A, 5i0u:A, 2ic1:A, 4ieo:A, 4iep:A, 4ieq:A, 4ier:A, 4ies:A, 4iet:A, 4ieu:A, 4iev:A, 4iew:A, 4iex:A, 4iey:A, 4iez:A, 4jtn:A, 4jto:A, 4kwj:A, 4kwk:A, 4kwl:A, 6n42:A, 6n43:A, 4pix:A, 4piy:A, 4piz:A, 4pjy:A, 6u1m:A, 6u4l:A, 6u4s:A, 6u4v:A, 4ubg:A, 4ubh:A, 8vl9:D, 8vlb:D, 4xet:A, 4xez:A, 4xf0:A, 4xf1:A, 4xf3:A, 4xf4:A, 4xf9:A, 4xfa:A, 4xfb:A, 4xfc:A, 4xff:A, 4xfg:A, 4xfh:A, 4xfi:A, 4ysf:A, 4yyo:A, 4z82:A
5 7cxz:A 245 61 0.0872 0.0694 0.2787 2.0
6 8p7b:B 455 44 0.0923 0.0396 0.4091 2.3 8p7b:D, 8p7c:B, 8p7c:D, 8p7d:B, 4rqe:C, 4rqf:A
7 2e5y:A 133 51 0.0923 0.1353 0.3529 8.0 2e5y:B, 7xkq:H
8 8h8i:A 431 22 0.0513 0.0232 0.4545 8.1 8hbt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218