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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ILPLNNIQGDILVGMKKQKERFVFFQVNDATSFKTALKTYVPERITSAAILISDPSQQPLAFVNLGFSNTGLQALGITDD
LGDAQFPDGQFADAANLGDDLSQWVAPFTGTTIHGVFLIGSDQDDFLDQFTDDISSTFGSSITQVQALSGSARPGDQAGH
EHFGFLDGISQPSVTGWETTVFPGQAVVPPGIILTGRDGDTGTRPSWALDGSFMAFRHFQQKVPEFNAYTLANAIPANSA
GNLTQQEGAEFLGARMFGRWKSGAPIDLAPTADDPALGADPQRNNNFDYSDTLTDETRCPFGAHVRKTNPRQDLGGPVDT
FHAMRSSIPYGPETSDAELASGVTAQDRGLLFVEYQSIIGNGFRFQQINWANNANFPFSKPITPGIEPIIGQTTPRTVGG
LDPLNQNETFTVPLFVIPKGGEYFFLPSISALTATIAA

The query sequence (length=438) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3afv:A 439 438 1.0000 0.9977 1.0000 0.0 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A
2 7d8m:A 451 447 0.6210 0.6031 0.6085 0.0
3 4au9:A 448 451 0.5502 0.5379 0.5344 1.72e-157 5ag0:A, 5ag0:B, 5ag1:A, 5ag1:B, 4au9:B, 5ikd:A, 5ikg:A, 4uzi:A, 4uzi:B, 4w7j:A, 4w7j:B, 4w7j:C, 4w7j:D, 4w7k:A, 4w7k:B, 4w7l:A, 4w7l:B, 4w7m:A, 4w7m:B, 4w7n:A, 4w7n:B, 4w7o:A
4 7anv:A 467 468 0.5594 0.5246 0.5235 4.17e-152
5 6fsk:A 484 485 0.4817 0.4360 0.4351 4.66e-121 6fsk:B, 6fsl:A, 6fsl:B
6 8re3:A 445 408 0.2785 0.2742 0.2990 2.05e-40 8re2:A, 8re3:B
7 5c2i:A 468 469 0.3151 0.2949 0.2942 9.59e-33 5c2i:B, 5c2i:C, 5c2i:D
8 4g2c:B 463 471 0.3151 0.2981 0.2930 3.53e-30 4g2c:A
9 6jbn:A 391 183 0.1119 0.1253 0.2678 0.002 6jbn:B
10 2y4e:A 384 185 0.1142 0.1302 0.2703 0.008 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
11 4een:A 229 55 0.0411 0.0786 0.3273 1.5
12 7vm0:B 406 47 0.0342 0.0369 0.3191 1.5 8h5d:A, 8h5d:B, 7vm0:A
13 7x11:A 564 137 0.0776 0.0603 0.2482 2.1 7x11:B, 7x11:C, 7x11:D, 7x12:A, 7x12:B, 7x12:C, 7x12:D
14 5c2t:A 616 34 0.0320 0.0227 0.4118 2.6 5c2t:E, 5c3j:A, 5c3j:E, 3vr8:A, 3vr8:E, 3vr9:A, 3vr9:E, 3vra:A, 3vra:E, 3vrb:A, 3vrb:E, 4ysx:A, 4ysx:E, 4ysy:A, 4ysy:E, 4ysz:A, 4ysz:E, 4yt0:A, 4yt0:E, 4ytm:A, 4ytm:E, 4ytn:A, 4ytn:E
15 4gt2:A 371 160 0.0936 0.1105 0.2562 8.4 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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