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BioLiP
>protein
ILKELENLSPEEAAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYT
WYVRKQREVAQQFTHAGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV
RVYNWFANRRKEEA

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pi9:B 177 176 0.9943 0.9774 0.9830 1.20e-126 1ic8:A, 1ic8:B, 8pi7:A, 8pi7:B, 8pi8:A, 8pi8:B, 8pi9:A, 8pia:A, 8pia:B
2 2h8r:A 176 175 0.8333 0.8239 0.8286 8.87e-108 2h8r:B
3 4j19:A 77 74 0.1437 0.3247 0.3378 1.38e-04 4j19:B
4 6sdk:A 199 98 0.1494 0.1307 0.2653 2.2 6sdk:B, 6sdk:C, 6sdk:D
5 8x7u:D 654 59 0.1034 0.0275 0.3051 3.1 8x7u:E, 8x7u:C, 8x7u:B, 8x7u:F, 8x7u:A
6 8aly:E 259 57 0.0862 0.0579 0.2632 3.9 6a84:A, 5adq:A, 5adr:A, 5ads:A, 5adt:A, 8aly:J, 8aly:I, 8aly:H, 8aly:G, 8aly:F, 8aly:D, 8aly:C, 8aly:B, 8aly:A, 8aly:O, 8aly:T, 8aly:S, 8aly:R, 8aly:Q, 8aly:N, 8aly:M, 8aly:L, 8aly:K, 8b6m:C, 5c5p:A, 5c5q:A, 5c5r:A, 7ce4:A, 4hki:A, 4hki:H, 4hkk:A, 4hkk:C, 4hkn:A, 4hl5:A, 4hlf:A, 4hlf:B, 4hlg:A, 4hlg:B, 4hlh:A, 4hlh:B, 4hlk:A, 4hlk:B, 4hlm:A, 4hlm:B, 4hmh:A, 6kro:A, 4kzl:A, 4kzl:B, 4kzq:A, 4kzq:B, 4kzu:A, 4kzu:B, 4l09:A, 4l09:B, 4l0b:A, 4l0b:B, 4l0i:A, 4l0i:B, 4l0s:A, 4l0s:B, 4l0t:A, 4l0t:B, 4l0v:A, 4l0v:B, 4l10:A, 4l10:B, 4l2f:A, 4l2f:B, 4l2g:A, 4l2g:B, 4l2k:A, 4l2k:B, 4l31:A, 4l31:B, 4l32:A, 4l32:B, 4l33:A, 4l33:B, 4l34:A, 4l34:B, 5nob:B, 5nsp:A, 5nsp:B, 5nsx:A, 5nsx:B, 5nt0:A, 5nt0:B, 5nt4:A, 5nt4:B, 5nvc:A, 5nvc:B, 5nve:A, 5nve:B, 5nvf:A, 5nvf:B, 5nvh:A, 5nvh:B, 5nwb:A, 5nwb:B, 5nwc:A, 5nwc:B, 5nwd:A, 5nwd:B, 5nwg:B, 5nxe:A, 5nxe:B, 7o6x:AAA, 7olj:AAA, 7olj:BBB, 7om1:AAA, 7om1:BBB, 7omc:AAA, 7omc:BBB, 4pnq:D, 4pns:D, 4pnt:D, 7pox:AAA, 7r3z:C, 7r5x:AAA, 7r5x:BBB, 6tg4:BBB, 4tju:D, 4tjw:D, 4tkf:D, 6tkp:BBB, 6tkq:BBB, 4ui3:A, 4ui3:B, 4ui4:A, 4ui4:B, 4ui5:A, 4ui5:B, 4ui6:A, 4ui6:B, 4ui7:A, 4ui7:B, 4ui8:A, 4ui8:B, 4uvp:A, 4uvp:C, 5zqo:A, 5zqp:A, 5zqq:A, 5zqr:A
7 6nhl:B 228 69 0.1092 0.0833 0.2754 4.0 6nhl:A
8 1fjl:A 65 73 0.1149 0.3077 0.2740 5.3 1fjl:B, 1fjl:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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