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BioLiP
>protein
ILIDVPLYQADTNDYLDENGQVIFNLSTLIKEKYHLIGKYDVEDPFIDDSELLWEEKDGFFVYF

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ghm:L 64 64 1.0000 1.0000 1.0000 2.56e-41
2 8ghm:F 43 64 0.6719 1.0000 0.6719 9.20e-21
3 4a04:B 190 52 0.2812 0.0947 0.3462 0.69 4a04:A
4 6hvg:A 1278 32 0.2031 0.0102 0.4062 1.4 6hvg:B, 6syq:A, 6syq:B, 6szi:A, 6szi:B, 6t16:B, 6t16:A, 6t18:A, 6t18:B, 6t1p:A, 6t1p:B
5 6zj3:LY 134 39 0.2031 0.0970 0.3333 1.7
6 4ox3:A 214 33 0.2031 0.0607 0.3939 2.7
7 4v3p:LM 140 39 0.2031 0.0929 0.3333 3.2 8azw:e, 8b2l:e3, 8ip8:GA, 8ipa:GA, 8ipb:GA, 8jiv:CV, 7qiw:X, 7qiz:X, 4v7e:CV
8 6m0r:A 750 19 0.1406 0.0120 0.4737 3.8 7tao:A
9 8ceh:g 183 30 0.1562 0.0546 0.3333 3.9 8cg8:g, 8civ:g, 8cmj:g, 7osm:uS3
10 5iji:A 227 34 0.1562 0.0441 0.2941 5.3 5jef:A, 5jef:B, 5jgp:A
11 4ba0:A 781 32 0.1562 0.0128 0.3125 6.5 4b9y:A, 4b9z:A, 5i23:A, 5i24:A, 5npb:A, 5npc:A, 5npd:A, 5npe:A, 7p4c:AAA, 7p4d:AAA, 8rw3:C, 8rw3:A, 8rw3:B
12 6zu5:LB0 363 66 0.3125 0.0551 0.3030 6.7
13 5an9:E 136 39 0.1719 0.0809 0.2821 7.4 5anb:E, 5anc:E, 6qkl:E
14 8g27:I 720 25 0.2344 0.0208 0.6000 8.1 8g27:C, 8g27:D, 8g2j:C, 8g2j:D, 8g2j:I, 6wlb:A, 6wlb:C, 6wlb:B
15 3mbh:A 290 31 0.2031 0.0448 0.4194 8.8 3mbh:B, 3mbh:C, 3mbh:D, 3mbh:E, 3mbh:F, 3mbj:A
16 4ng4:B 389 46 0.2031 0.0334 0.2826 8.9 4ng4:A, 4ng4:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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