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BioLiP
>protein
IKSLFAVIIGGSVGCTLRWLLSTKFNSLFPNLPPGTLVVNLLAGLIIGTMLAYFLRQPHLDPFWKLMITTGLCGGLSTFS
TFSVEVFALLQAGNYIWALTSVLVHVIGSLIMTALGFFIITILF

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a43:B 126 124 1.0000 0.9841 1.0000 1.63e-84 5a43:A, 6b24:A, 6b24:B, 6b2a:A, 6b2a:B, 6b2b:A, 6b2b:B, 6b2d:A, 6b2d:B, 6bx4:A, 6bx4:B, 6bx5:A, 6bx5:B, 5kbn:A, 5kbn:B, 7kk8:A, 7kk8:B, 7kk9:A, 7kk9:B, 7kka:A, 7kka:B, 7kkb:A, 7kkb:B, 7kkr:A, 7kkr:B, 5kom:A, 5kom:B
2 6bqo:B 128 119 0.3790 0.3672 0.3950 1.90e-16 6bqo:A, 5nkq:A, 5nkq:B, 5nkq:C
3 2r4v:A 226 74 0.1774 0.0973 0.2973 4.9 2per:A
4 8sun:B 743 31 0.0968 0.0162 0.3871 6.6 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
5 8b8m:B 682 31 0.0968 0.0176 0.3871 7.5
6 8b8j:A 709 31 0.0968 0.0169 0.3871 8.5 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
7 5lj7:A 592 57 0.1210 0.0253 0.2632 9.0
8 5lil:A 615 57 0.1210 0.0244 0.2632 9.2 5lil:B, 5lj6:A, 5lj7:B
9 8bc0:B 636 31 0.0968 0.0189 0.3871 9.8 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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