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BioLiP
>protein
IKQKLETQFTCLFCNHDNSVVCTLDKKNSIGLLECKKCGQRFQAPINSLSQPIDIYSDWIDACE

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8he5:M 64 64 0.9531 0.9531 0.9531 2.63e-40 6ir9:M, 6j4w:M, 6j4x:M, 6j4y:M, 6j51:M, 8jh2:M, 7wbv:M, 7wbx:M, 7xn7:M, 5xog:M, 7xse:M, 7xsx:M, 7xsz:M, 7xt7:M, 7xtd:M, 7xti:M
2 1wii:A 85 60 0.5156 0.3882 0.5500 9.80e-22 8b3d:M, 8b3f:M
3 5xy3:p 89 48 0.1875 0.1348 0.2500 0.046
4 7olc:Lp 91 45 0.2031 0.1429 0.2889 0.14 8ia0:Lp, 7old:Lp, 8oo0:Lp, 8pv1:Lp, 8pv2:Lp, 8pv3:Lp, 8pv4:Lp, 8pv5:Lp, 8pv6:Lp, 8pv7:Lp, 8pv8:Lp, 8pvk:Lp, 8pvl:Lp, 7r81:r1, 7z3n:Lp, 7z3o:Lp
5 4xsv:A 306 38 0.2031 0.0425 0.3421 2.2 3elb:A
6 4v4n:Ai 78 42 0.1875 0.1538 0.2857 2.7 4v6u:Bi
7 8smc:C 1084 67 0.2812 0.0166 0.2687 2.9
8 8u7h:C 1111 67 0.2812 0.0162 0.2687 2.9
9 9ezy:B 657 19 0.1250 0.0122 0.4211 3.2
10 2xig:C 150 20 0.1406 0.0600 0.4500 4.2 2xig:A, 2xig:B, 2xig:D
11 7e5a:B 471 46 0.1562 0.0212 0.2174 4.2 7e5a:A
12 6zu5:LT0 160 30 0.1719 0.0688 0.3667 5.0
13 3io3:A 230 42 0.2031 0.0565 0.3095 5.5
14 6raz:7 601 16 0.1250 0.0133 0.5000 7.5 6ray:7
15 6rax:7 632 16 0.1250 0.0127 0.5000 8.3 6raw:7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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