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BioLiP
>protein
IKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYEALIMIIAAVPEELVGPLLEGFQPFFEAHSGV
VFVHDIQVGRP

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d4n:B 90 91 0.9890 1.0000 0.9890 4.41e-59 5drk:C
2 5d4o:A 106 100 1.0000 0.8585 0.9100 2.06e-58 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
3 7r30:B 102 85 0.2308 0.2059 0.2471 0.004 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 43 0.1758 0.1468 0.3721 0.12 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 1rcq:A 357 40 0.1429 0.0364 0.3250 0.71
6 2e59:A 144 61 0.1758 0.1111 0.2623 1.7 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
7 7p97:AAA 203 53 0.1978 0.0887 0.3396 1.9 7p97:BBB
8 7o4x:A 103 62 0.2088 0.1845 0.3065 2.0
9 8vhh:A 389 46 0.1648 0.0386 0.3261 2.9 8egy:A, 8egy:B, 8egz:A, 8egz:B, 8eh0:A, 8eh0:B, 8eh1:A, 8eh1:B, 8vhh:B
10 5zft:A 258 50 0.1538 0.0543 0.2800 3.6 4a5r:A, 4a5r:B, 3b3x:A, 3b3x:B, 5ghy:B, 5ghy:A, 5ghz:B, 5ghz:A, 1i2w:A, 1i2w:B, 3ly4:A, 3m2j:A, 3m2k:A, 3m2k:B, 4n9k:B, 4n9k:A, 4n9l:B, 4n9l:A, 3sh7:A, 3sh7:B, 3sh8:A, 3sh8:B, 3sh9:A, 3sh9:B, 2wk0:A, 2wk0:B, 2x71:A, 2y91:A, 2y91:B, 5zft:B, 5zg6:B, 5zg6:A
11 5m0p:A 424 31 0.1319 0.0283 0.3871 4.7 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
12 7jya:A 370 62 0.2198 0.0541 0.3226 5.2 7jya:B, 7jya:C
13 7s6u:A 351 54 0.1429 0.0370 0.2407 5.6 7s6v:A
14 5y2v:A 304 61 0.1648 0.0493 0.2459 6.2 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
15 3s5w:B 414 31 0.0989 0.0217 0.2903 8.4 3s5w:A, 3s61:A, 3s61:B
16 1jg1:A 215 52 0.2088 0.0884 0.3654 9.0 1jg2:A, 1jg3:A, 1jg3:B, 1jg4:A
17 3nbx:X 481 40 0.1319 0.0249 0.3000 9.7 6q7l:V, 6q7l:W, 6q7l:X, 6q7l:Y, 6q7l:Z, 6q7m:V, 6q7m:W, 6q7m:X, 6q7m:Y, 6q7m:Z, 6sza:B, 6sza:C, 6sza:A, 6sza:D, 6sza:E, 6sza:F, 6szb:D, 6szb:E, 6szb:C, 6szb:B, 6szb:A, 6szb:F
18 5y78:A 305 31 0.1538 0.0459 0.4516 9.7 5y78:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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