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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRIL
QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
VGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNH
NAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKK
IWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS
NPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTS
QLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSLLPDVYEWP

The query sequence (length=553) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xde:A 562 553 1.0000 0.9840 1.0000 0.0 7bsj:A, 7bsj:B, 7bsk:A, 7bsk:B, 7bsl:A, 7bsl:B, 1do8:A, 1do8:D, 1do8:B, 1do8:C, 1efk:A, 1efk:D, 1efk:B, 1efk:C, 1efl:A, 1efl:B, 1efl:C, 1efl:D, 1gz3:A, 1gz3:B, 1gz3:C, 1gz3:D, 1gz4:A, 1gz4:B, 1gz4:C, 1gz4:D, 1pj2:A, 1pj2:D, 1pj2:B, 1pj2:C, 1pj3:A, 1pj3:B, 1pj3:C, 1pj3:D, 1pj4:A, 1pj4:B, 1pj4:C, 1pj4:D, 1pjl:A, 1pjl:B, 1pjl:C, 1pjl:D, 1pjl:E, 1pjl:F, 1pjl:G, 1pjl:H, 1qr6:A, 1qr6:B, 7xde:B, 7xde:C, 7xde:D, 7xdf:A, 7xdf:B, 7xdf:C, 7xdf:D, 7xdg:A, 7xdg:B, 7xdg:C, 7xdg:D
2 1gq2:A 555 551 0.5750 0.5730 0.5771 0.0 1gq2:B, 1gq2:C, 1gq2:D, 1gq2:E, 1gq2:F, 1gq2:G, 1gq2:H, 1gq2:I, 1gq2:J, 1gq2:K, 1gq2:L, 1gq2:M, 1gq2:N, 1gq2:O, 1gq2:P
3 8eyo:A 562 550 0.5624 0.5534 0.5655 0.0 8e8o:A, 8e8o:B, 8e8o:C, 8e8o:D, 8eyo:B
4 7x11:A 564 551 0.5552 0.5443 0.5572 0.0 7x11:B, 7x11:C, 7x11:D, 7x12:A, 7x12:B, 7x12:C, 7x12:D
5 1o0s:A 602 554 0.5280 0.4850 0.5271 0.0 1llq:A, 1llq:B, 1o0s:B
6 6c7n:A 553 540 0.4828 0.4828 0.4944 0.0 6c7n:B, 6c7n:C
7 6w29:A 545 549 0.3870 0.3927 0.3898 2.89e-134 6w49:A, 6w53:A, 6w56:A, 6w57:A, 6w59:A
8 6c7n:D 389 307 0.2857 0.4062 0.5147 7.79e-108
9 6c7n:D 389 99 0.0542 0.0771 0.3030 7.55e-04
10 2a9f:A 383 363 0.1736 0.2507 0.2645 1.44e-19 2a9f:B
11 2hae:B 373 352 0.1718 0.2547 0.2699 1.95e-19 2hae:A, 2hae:C, 2hae:D
12 2dvm:A 438 447 0.2224 0.2808 0.2752 1.56e-18 2dvm:B, 2dvm:C, 2dvm:D
13 5cee:A 387 380 0.1826 0.2610 0.2658 5.27e-18
14 6zng:F 753 345 0.1609 0.1182 0.2580 1.43e-13 6zn4:A, 6zn4:B, 6zn7:A, 6zn7:B, 6zng:A, 6zng:B, 6zng:C, 6zng:D, 6zng:E, 6znt:A, 6znt:B, 6znt:C, 6znt:D, 6znt:F, 6znt:E, 6znu:A, 6znu:G, 6znu:B, 6znu:C, 6znu:D, 6znu:E
15 5k5z:D 314 115 0.0506 0.0892 0.2435 0.16 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
16 3am8:A 276 53 0.0307 0.0616 0.3208 1.4 3am8:B, 7bh8:A, 7bh8:C, 3bze:A, 3bze:C, 3bze:G, 3bze:E, 3bzf:A, 3bzf:C, 3cdg:A, 3cdg:C, 3cii:A, 3cii:D, 2esv:A, 6ggm:A, 6ggm:C, 6gh1:A, 6gh1:C, 6gh1:E, 6gh1:G, 6gh4:A, 6gh4:C, 6gh4:E, 6gh4:G, 6ghn:A, 6ghn:C, 6gl1:A, 6gl1:E, 6gl1:G, 6gl1:C, 1kpr:A, 1kpr:C, 1ktl:A, 1ktl:C, 1mhe:A, 1mhe:C, 7ndq:AAA, 7ndt:AAA, 7ndt:FFF, 7ndu:AAA, 7p49:A, 7p49:C, 7p49:E, 7p49:G, 7p4b:A, 7p4b:E, 7p4b:C, 7p4b:G, 8qfy:AAA, 8qfy:FFF, 5w1v:A, 5w1v:F, 5w1v:K, 5w1v:P, 5w1w:A, 5w1w:F, 5w1w:K, 5w1w:P, 6zkw:A, 6zkx:A, 6zky:A, 6zkz:A
17 8jwo:L 311 64 0.0344 0.0611 0.2969 3.9 8jwk:H, 8jwo:A, 8jwo:C, 8jwo:D, 8jwo:E, 8jwo:G, 8jwo:I, 8jwo:K, 8jwo:M, 8jwo:O
18 4cd4:A 367 131 0.0542 0.0817 0.2290 5.7 4cd5:A, 2vx5:A, 2vx6:A, 2vx7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218