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BioLiP
>protein
IKDSKASIELRNFYFNRDFRSQSKAEEWAQGFLLRYESGYTEGTIGFGVDAIGLLGVKLDSQDDYGEAGITAKLRASKST
LKIGTLTPKLPVIMPNDSRLLPQTFQGGALNSMEIDGLTLDAGRLKKVNQRDSDNEDMTITGGGKRQIVVRSGLTSDKFD
FAGGSYKWTDNLSTSYHYGKLDNFYKQHYLGLVHTLPIADKQSLKSDIRWARSTDDGSSNVDNKALNAMFTYSLGYHAFG
VGYQKMSGDTGFAYINGADPYLVNFIQIGDFANKDEKSWQARYDYNFAGVGIPGLTFMTRYVKGDNIDLLTTSGEGKEWE
RDMDIAYVFQSGPLKNLGVKWRNATMRTNYTNDYDENRLIVSYTLPLW

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3t24:A 377 373 1.0000 0.9761 0.9866 0.0 3t24:B, 3t24:C
2 3szv:A 364 369 0.5734 0.5797 0.5718 2.43e-148 2y0k:A
3 3t0s:A 361 372 0.5353 0.5457 0.5296 1.30e-130 2y0h:A
4 4fsp:A 364 372 0.5054 0.5110 0.5000 1.39e-117
5 4frx:B 400 406 0.5000 0.4600 0.4532 1.61e-111 4frx:A
6 4ft6:A 387 399 0.4946 0.4703 0.4561 9.17e-108
7 4fso:A 354 373 0.4293 0.4463 0.4236 3.40e-98 4fso:B
8 3szd:B 371 376 0.4348 0.4313 0.4255 7.83e-96 4fms:B, 4fms:A, 3szd:A
9 2y2x:B 378 386 0.4266 0.4153 0.4067 1.98e-91 2qtk:A, 2qtk:B, 3sys:A, 3sys:B, 2y2x:A
10 2odj:B 388 389 0.4429 0.4201 0.4190 3.84e-82 4foz:A, 2odj:A, 3sy7:A
11 5dl7:A 402 406 0.4049 0.3706 0.3670 1.93e-69
12 3sy9:B 372 393 0.3641 0.3602 0.3410 1.31e-61 3sy9:A, 3sy9:C, 3sy9:D
13 3syb:A 408 357 0.3043 0.2745 0.3137 3.54e-45
14 5dl8:B 391 390 0.3207 0.3018 0.3026 1.60e-38 5dl8:A
15 5dl5:A 416 417 0.2989 0.2644 0.2638 2.35e-30
16 7tem:B 405 92 0.0788 0.0716 0.3152 1.4 7tem:A
17 6p2k:B 778 85 0.0679 0.0321 0.2941 1.7 6p2k:A
18 6vhy:C 540 55 0.0462 0.0315 0.3091 2.3 6vhv:A, 6vhw:A, 6vhw:B, 6vhx:A, 6vhx:B, 6vhy:D, 6vhy:A, 6vhy:B, 6vhz:A, 6vhz:B
19 4gvq:A 315 61 0.0462 0.0540 0.2787 2.5 4gvq:B, 4gvs:B
20 7ane:at 204 89 0.0516 0.0931 0.2135 7.8
21 3ecq:B 1347 74 0.0489 0.0134 0.2432 9.8 5a55:A, 5a56:A, 5a57:A, 5a58:A, 5a59:A, 5a5a:A, 3ecq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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