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BioLiP
>protein
IILSNKPNIRGIKNVVEDIKYRNQLIGRDGRLFAGLIATRISGIAIGFLLAVLLVGVPAMMSILGVI

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q3v:F 67 67 1.0000 1.0000 1.0000 7.43e-41 8q3v:V, 8q3v:f, 8q54:V, 8q54:F, 8q54:f
2 8q3v:A 61 48 0.2090 0.2295 0.2917 0.017 8q3v:a, 8q3v:Q, 8q54:A, 8q54:a, 8q54:Q
3 3puo:A 292 48 0.2388 0.0548 0.3333 1.0 3puo:B, 3s8h:A, 3s8h:B
4 4jrn:A 349 32 0.2090 0.0401 0.4375 2.8
5 4dnr:A 1031 33 0.1791 0.0116 0.3636 5.6 3k0i:A, 7kf6:A, 7kf6:B, 7kf6:C, 7kf7:B, 7kf8:B, 7kf8:C, 3t53:A
6 6pqc:A 252 21 0.1194 0.0317 0.3810 6.6 7kep:A, 7keq:A, 7ker:A, 7lnq:A, 7lnr:A, 7mea:A, 7meb:A, 7mec:A, 7med:A, 7mee:A, 7mef:A, 7meg:A, 7meh:A
7 7p5o:B 558 38 0.1642 0.0197 0.2895 8.9 7p5o:A
8 8ayh:B 951 26 0.1493 0.0105 0.3846 9.3 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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