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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IIDFGDSKARTDTEHLAINNETGYRSFRAGGFTFTRDEYFARLTWPGGSHIIPIDAFLRAMMRDVAWGFFYGVVNFDHVF
GTINHYGEVTMFAGRFNDAYRNAGRDHEERFKSSALMAVFKDILSDWTVEGYDPFAAPMETGLPWGIKNGNNDEAISRQR
VTARRMVGLPGDTPVRTDANGFPVNRQFADVPQEQPVVEAEPGFEAEVSAYNLFGYLSRSDVTWNPSVCSVVGDSLFCPT
SEEFILPVEHGNDRCEWFLQLSDEIVWDVKDKESGKPRARVTARAGDICCMPADIRHQGYSTKRSMLLVWENGSPKIPQM
IADGTAPVVPVT

The query sequence (length=332) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5m21:H 333 332 1.0000 0.9970 1.0000 0.0 5m21:B, 5m21:D, 5m21:F, 5m22:B, 5m22:D, 5m22:F, 5m22:H, 5m26:B, 5m26:D, 5m26:F, 5m26:H, 5m4o:B, 5m4o:D, 5m4o:F, 5m4o:H
2 4zxa:W 324 314 0.5934 0.6080 0.6274 7.67e-145 4zxa:X, 4zxa:Y, 4zxa:Z, 4zxc:W, 4zxc:Z
3 8sun:B 743 46 0.0482 0.0215 0.3478 0.59 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
4 8bc0:B 636 46 0.0482 0.0252 0.3478 0.59 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
5 8b8m:B 682 46 0.0482 0.0235 0.3478 0.62
6 8b8j:A 709 46 0.0482 0.0226 0.3478 0.65 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
7 2ckb:A 202 41 0.0512 0.0842 0.4146 3.2 2ckb:C, 3e2h:B, 3e3q:D, 3e3q:C, 3e3q:d, 3e3q:I, 3e3q:M, 3e3q:R, 3e3q:V, 3e3q:Z, 2e7l:B, 2e7l:A, 1g6r:A, 1mwa:A
8 1isq:A 240 49 0.0512 0.0708 0.3469 3.3
9 6vkz:A 429 53 0.0452 0.0350 0.2830 4.2 6vl0:A, 6vl1:A
10 8bc1:A 527 29 0.0361 0.0228 0.4138 6.0 8bc1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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