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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IHVGHHTLVFELFGMTFNGDTILATAVTAVIVIALAFYLRAKVTSTGVPSGVQLFWEALTIQMRQQIEGSIGMKIAPFVL
PLSVTIFVFILISNWLAVLPLQYGGGAAAELYKAPASDINFVLALALFVFVCYHAAGIWRRGIVGHPIKVVKGHVAFLAP
INIVEELAKPISLALRLFGNIFAGGILVALIAMFPWYIQWFPNAVWKTFDLFVGLIQAFIFSLLTILYFSQSME

The query sequence (length=234) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7njv:a 238 236 1.0000 0.9832 0.9915 7.41e-167 8g07:a, 8g0a:a, 8g0b:a, 8g0e:a, 7jga:a, 7jgc:a
2 8j0s:a 237 237 0.7735 0.7637 0.7637 4.50e-126 8j57:a, 8jr0:a, 8jr1:a
3 6b2z:a 249 193 0.2051 0.1928 0.2487 6.92e-07 6b2z:M, 6b8h:a, 6b8h:p
4 6j54:a 223 92 0.1197 0.1256 0.3043 0.057 6j5a:a, 6j5i:a, 6j5k:Ba, 6j5k:Ca, 6zmr:a
5 2cfa:A 180 107 0.1026 0.1333 0.2243 0.32 2cfa:B, 4fzb:H, 4fzb:J, 4fzb:N
6 4fzb:C 207 72 0.0897 0.1014 0.2917 0.35 4fzb:A, 4fzb:D, 4fzb:B, 4fzb:E, 4fzb:G, 4fzb:F, 4fzb:I, 4fzb:K, 4fzb:L, 4fzb:M, 4fzb:O, 4fzb:P
7 8y7g:B 543 139 0.1496 0.0645 0.2518 0.60 8y7g:A
8 6zpo:a 226 83 0.1026 0.1062 0.2892 1.0 6zbb:a, 6zqm:a, 6zqn:a
9 6rx4:B 379 56 0.0812 0.0501 0.3393 1.3 6rko:B
10 3w36:B 471 116 0.1154 0.0573 0.2328 4.9 3w36:A
11 8sq0:A 1402 241 0.2350 0.0392 0.2282 7.3 8sq0:B, 8sql:A, 8sqm:A
12 7xm9:A 1230 65 0.0812 0.0154 0.2923 8.6 6j8g:A, 6j8h:A, 6j8i:A, 6j8j:A, 7xmf:A, 7xmg:A, 8xmm:A
13 8xmn:A 1277 65 0.0812 0.0149 0.2923 8.6 8i5b:A, 8i5g:A, 8i5x:A, 8i5y:A, 8j4f:A, 8s9b:A, 8s9c:A, 8thg:A, 8thh:A, 7xve:A, 7xvf:A
14 7rbq:A 614 37 0.0641 0.0244 0.4054 8.9 7t39:A
15 5ubk:A 709 21 0.0427 0.0141 0.4762 9.0 4k2f:B, 4k2g:B, 3l91:B, 4m1j:C, 3srb:A, 3srb:B, 3src:B, 4wks:C, 4wkt:C, 4wku:B, 4wkv:C, 2wyc:A, 2wyc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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