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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IHNFGAGPAAMAKEVIEATAKAVNNFWEGLSILEISHRSKEWINVMNETKALMKEVMDIPEGYEILFFGGGASLQFLMVA
MNLLNKKACYLDTGVWASKAIKEAENIGEVKIIGTSKDKNYTYIPEYQIPSDYDYFHITTNNTIYGTEIRKDIESPIPLV
ADMSSDILSKPIDISKYSLIYAGAQKNCGAAGVTIVIIKKEILGKVQRKIPIILDYQVHILNNSMYNTPPVISIFTVNQT
LKYIKKIGGLKKIQELNEEKARLLYAEIDRNKIFRGTVRKKDRSIMNVCFVMEEQYKQLENEFSEYALQKGIIGIKGHRS
VGGFRASIYNAVTIESVQALIKCMHDFEQ

The query sequence (length=349) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yb0:B 349 349 1.0000 1.0000 1.0000 0.0 5yb0:A, 5yb0:C, 5yb0:D, 5yb0:E, 5yb0:F, 5yb0:G, 5yb0:H, 5yb0:I, 5yb0:J, 5yb0:K, 5yd2:A, 5yd2:B
2 1bt4:A 361 356 0.4527 0.4377 0.4438 2.58e-105 2c0r:A, 2c0r:B, 1w3u:A
3 4azj:A 360 357 0.4556 0.4417 0.4454 8.90e-105 4azj:B, 4azk:A, 4azk:B, 2bhx:A, 2bhx:B, 2bi1:A, 2bi1:B, 2bi2:A, 2bi2:B, 2bi3:A, 2bi3:B, 2bi5:A, 2bi5:B, 2bi9:A, 2bi9:B, 2bia:A, 2bia:B, 2bie:A, 2bie:B, 2big:A, 2big:B, 1w23:A, 1w23:B
4 6czy:A 362 360 0.4241 0.4088 0.4111 1.66e-95 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
5 3qbo:B 359 359 0.4269 0.4150 0.4150 1.18e-90 3qbo:A
6 1bjo:A 360 360 0.4126 0.4000 0.4000 3.98e-87 1bjo:B
7 8a5v:E 366 358 0.4097 0.3907 0.3994 3.37e-84 8a5v:C, 8a5v:F, 8a5v:B, 8a5v:A, 8a5v:G, 8a5v:H, 8a5w:D, 8a5w:C, 8a5w:E, 8a5w:F, 8a5w:B, 8a5w:A, 8a5w:H, 3e77:A, 3e77:B
8 7t7j:B 360 360 0.3983 0.3861 0.3861 7.37e-83 7t7j:A
9 6xdk:D 359 355 0.3696 0.3593 0.3634 8.05e-81 6xdk:B, 6xdk:A, 6xdk:C
10 3qm2:B 331 357 0.3782 0.3988 0.3697 4.38e-69 3qm2:A
11 2fyf:A 368 361 0.2264 0.2147 0.2188 7.58e-19 2fyf:B, 3vom:A, 3vom:B
12 3ffr:A 361 306 0.1948 0.1884 0.2222 8.35e-08
13 2dr1:A 381 290 0.1977 0.1811 0.2379 2.42e-06 2dr1:B
14 3kgw:B 388 251 0.1633 0.1469 0.2271 0.19 3kgw:A, 3kgx:A
15 7kgm:A 512 77 0.0602 0.0410 0.2727 0.23
16 7kgn:A 462 77 0.0602 0.0455 0.2727 0.64
17 5dzt:A 886 108 0.1003 0.0395 0.3241 1.3
18 6v11:C 503 61 0.0516 0.0358 0.2951 1.4 6v11:A, 6v11:B, 6v11:F
19 6v11:E 464 62 0.0516 0.0388 0.2903 2.2
20 6on2:B 524 62 0.0516 0.0344 0.2903 2.2 6on2:C, 6on2:A, 6on2:D, 6on2:E, 6on2:F
21 8w0t:A 398 82 0.0630 0.0553 0.2683 2.5 8w0t:B, 8w0t:C, 8w0t:D, 8w0u:A, 8w0u:B, 8w0u:C, 8w0u:D, 8w0z:A, 8w0z:B, 8w0z:C, 8w0z:D, 8w0z:E, 8w0z:F, 8w0z:G, 8w0z:H
22 3e70:C 307 69 0.0544 0.0619 0.2754 3.1
23 6ntw:A 505 77 0.0573 0.0396 0.2597 3.2
24 1ze1:D 284 47 0.0516 0.0634 0.3830 3.3
25 3cg3:A 315 156 0.1060 0.1175 0.2372 3.3
26 1ze1:A 308 47 0.0516 0.0584 0.3830 4.7 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
27 3cg1:A 293 88 0.0659 0.0785 0.2614 5.0 3cg1:B
28 8hhl:A 592 63 0.0487 0.0287 0.2698 6.3 8hhm:A
29 3ah5:A 215 116 0.0716 0.1163 0.2155 9.5 3ah5:C, 3ah5:B, 3ah5:D, 3ah5:E, 3ah5:F, 3n3y:A, 3n3y:B, 3n3y:C, 3n3y:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218