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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IHNFGAGPAAMAKEVIEATAKAVNNFWEGLSILEISHRSKEWINVMNETKALMKEVMDIPEGYEILFFGGGASLQFLMVA
MNLLNKKACYLDTGVWASKAIKEAENIGEVKIIGTSKDKNYTYIPEYQIPSDYDYFHITTNNTIYGTEIRKDIESPIPLV
ADMSSDILSKPIDISKYSLIYAGAQKNCGAAGVTIVIIKKEILGKVQRKIPIILDYQVHILNNSMYNTPPVISIFTVNQT
LKYIKKIGGLKKIQELNEEKARLLYAEIDRNKIFRGTVRKKDRSIMNVCFVMEENEFSEYALQKGIIGIKGHRSVGGFRA
SIYNAVTIESVQALIKCMHDFE

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yb0:B 349 348 1.0000 0.9799 0.9828 0.0 5yb0:A, 5yb0:C, 5yb0:D, 5yb0:E, 5yb0:F, 5yb0:G, 5yb0:H, 5yb0:I, 5yb0:J, 5yb0:K, 5yd2:A, 5yd2:B
2 4azj:A 360 354 0.4649 0.4417 0.4492 3.79e-104 4azj:B, 4azk:A, 4azk:B, 2bhx:A, 2bhx:B, 2bi1:A, 2bi1:B, 2bi2:A, 2bi2:B, 2bi3:A, 2bi3:B, 2bi5:A, 2bi5:B, 2bi9:A, 2bi9:B, 2bia:A, 2bia:B, 2bie:A, 2bie:B, 2big:A, 2big:B, 1w23:A, 1w23:B
3 1bt4:A 361 353 0.4591 0.4349 0.4448 7.19e-104 2c0r:A, 2c0r:B, 1w3u:A
4 6czy:A 362 358 0.4298 0.4061 0.4106 2.49e-94 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
5 3qbo:B 359 356 0.4327 0.4123 0.4157 1.09e-89 3qbo:A
6 1bjo:A 360 357 0.4181 0.3972 0.4006 3.44e-86 1bjo:B
7 8a5v:E 366 358 0.4152 0.3880 0.3966 2.08e-83 8a5v:C, 8a5v:F, 8a5v:B, 8a5v:A, 8a5v:G, 8a5v:H, 8a5w:D, 8a5w:C, 8a5w:E, 8a5w:F, 8a5w:B, 8a5w:A, 8a5w:H, 3e77:A, 3e77:B
8 7t7j:B 360 357 0.4035 0.3833 0.3866 5.24e-82 7t7j:A
9 6xdk:D 359 352 0.3743 0.3565 0.3636 2.99e-79 6xdk:B, 6xdk:A, 6xdk:C
10 3qm2:B 331 354 0.3860 0.3988 0.3729 3.23e-69 3qm2:A
11 2fyf:A 368 357 0.2310 0.2147 0.2213 6.01e-20 2fyf:B, 3vom:A, 3vom:B
12 3ffr:A 361 306 0.1988 0.1884 0.2222 6.80e-08
13 2dr1:A 381 290 0.2018 0.1811 0.2379 2.22e-06 2dr1:B
14 3kgw:B 388 251 0.1667 0.1469 0.2271 0.15 3kgw:A, 3kgx:A
15 7kgm:A 512 77 0.0614 0.0410 0.2727 0.27
16 7kgn:A 462 77 0.0614 0.0455 0.2727 0.77
17 5dzt:A 886 108 0.1023 0.0395 0.3241 1.4
18 3cg3:A 315 156 0.1082 0.1175 0.2372 3.0
19 1ze1:D 284 47 0.0526 0.0634 0.3830 3.1
20 3e70:C 307 69 0.0556 0.0619 0.2754 3.4
21 8hhl:A 592 51 0.0526 0.0304 0.3529 3.6 8hhm:A
22 6ntw:A 505 77 0.0585 0.0396 0.2597 4.0
23 1ze1:A 308 47 0.0526 0.0584 0.3830 4.2 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
24 3cg1:A 293 88 0.0673 0.0785 0.2614 5.0 3cg1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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