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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEE
PTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6edt:M 159 159 1.0000 1.0000 1.0000 1.87e-113 6ee8:M, 6eec:M, 7kif:M, 7kin:M, 6vvx:M, 6vvy:M, 6vvz:M, 6vw0:M
2 8hvr:H 158 157 0.8491 0.8544 0.8599 9.81e-96 8jke:H
3 7kim:M 135 159 0.8491 1.0000 0.8491 7.04e-86
4 4xls:M 162 154 0.2516 0.2469 0.2597 1.62e-13 4xlr:M, 4xlr:N, 4xls:N
5 6m6a:M 459 47 0.1006 0.0349 0.3404 0.012 6m6b:M
6 6acx:A 1175 59 0.1258 0.0170 0.3390 0.012 6acx:B
7 6rxt:CN 226 109 0.1698 0.1195 0.2477 0.20 5oql:e, 6rxu:CN, 6rxv:CN, 6rxx:CN, 6rxy:CN, 6rxz:CN
8 8p5d:SP0 117 44 0.1006 0.1368 0.3636 0.23 8p60:SP0, 8p60:RP0, 7qca:SP0
9 8yyr:A 496 61 0.1321 0.0423 0.3443 1.2 7dq5:A, 7dq5:B, 7dq6:A, 7dq6:B, 6m01:A, 8yyq:A
10 8hkx:S19P 115 52 0.1006 0.1391 0.3077 2.7 8hky:S19P, 8hkz:S19P, 8hl1:S19P, 8hl2:S19P, 8hl3:S19P, 8hl4:S19P, 8hl5:S19P, 8wkp:S19P, 8wq2:S19P, 8wq4:S19P
11 2vfk:A 205 60 0.1132 0.0878 0.3000 4.1 2vfl:A
12 5jj2:A 211 33 0.0943 0.0711 0.4545 5.6
13 5m0p:A 424 79 0.1447 0.0542 0.2911 9.0 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
14 5e26:B 362 26 0.0755 0.0331 0.4615 9.3 5e26:A, 5e26:C, 5e26:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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