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BioLiP
>protein
IEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNTLLMWEAVSVKTEVVG
ISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAK
LDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQ
KQYWRGLPRYFNITLRKRAVK

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6y6a:M 269 267 1.0000 0.9703 0.9775 0.0 6y6a:A, 6y6a:B, 6y6a:C, 6y6a:E, 6y6a:F, 6y6a:G, 6y6a:I, 6y6a:J, 6y6a:K, 6y6a:L, 6y6a:N, 6y6a:O, 6y6a:Q, 6y6a:R, 6y6a:S, 6y6a:T, 6y6a:V, 6y6a:X, 6y6a:Y, 6y6a:Z, 6y6a:a, 6y6a:b, 6y6a:c, 6y6a:d, 6y6a:e, 6y6a:f, 6y6a:j, 6y6a:n
2 6y66:GGG 268 267 0.6590 0.6418 0.6442 9.88e-124 6y66:AAA, 6y66:BBB, 6y66:CCC, 6y66:DDD, 6y66:EEE, 6y66:FFF, 6y66:HHH, 6y66:III, 6y66:JJJ
3 4pos:J 274 275 0.5900 0.5620 0.5600 1.36e-104 4por:B, 4por:A, 4por:C, 4por:D, 4por:E, 4por:F, 4por:H, 4por:G, 4por:I, 4por:J, 4pos:B, 4pos:A, 4pos:C, 4pos:E, 4pos:D, 4pos:G, 4pos:F, 4pos:H, 4pos:I, 4pot:B, 4pot:A, 4pot:C, 4pot:D, 4pot:E, 4pot:G, 4pot:F, 4pot:H, 4pot:I, 4pot:J
4 4u60:C 274 275 0.6092 0.5803 0.5782 1.60e-104 6hku:B, 6hku:C, 6hku:F, 6hku:I, 6hku:J, 6hku:D, 6hkv:A, 6hkv:B, 6hkv:C, 6hkv:D, 6hkv:E, 6hkv:F, 6hkv:G, 6hkv:H, 6hkv:I, 6hkv:J, 4u60:A, 4u60:D, 4u60:E, 4u60:B, 4u61:A, 4u61:B, 4u61:C, 4u61:E, 4u61:H, 4u61:I, 4u61:J, 4u62:B, 4u62:C, 4u62:J
5 4mby:A 277 273 0.5824 0.5487 0.5568 1.38e-103 4mby:B, 4mby:C, 4mby:D, 4mby:E, 4mby:G, 4mby:I, 4mby:H, 4mby:J, 4mby:F, 4mbz:B, 4mbz:A, 4mbz:C, 4mbz:E, 4mbz:D, 4mbz:I, 4mbz:H, 4mbz:J, 4mbz:F
6 6y60:AAA 260 264 0.5939 0.5962 0.5871 1.99e-100 6y60:DDD, 6y60:EEE, 6y60:FFF, 6y60:HHH, 6y60:III, 6y60:JJJ, 6y60:BBB, 6y60:CCC, 6y60:GGG
7 7b6s:FFF 271 274 0.5709 0.5498 0.5438 3.86e-100 7b6s:AAA, 7b6s:BBB, 7b6s:CCC, 7b6s:DDD, 7b6s:EEE, 7b6s:GGG, 7b6s:HHH, 7b6s:III, 7b6s:JJJ, 7b6t:AAA, 7b6t:CCC, 7b6t:DDD, 7b6t:FFF, 7b6t:HHH, 7b6t:JJJ, 7b6t:GGG, 7b6t:III, 7b6u:AAA, 7b6u:BBB, 7b6u:CCC, 7b6u:DDD, 7b6u:EEE, 7b6u:FFF, 7b6u:GGG, 7b6u:HHH, 7b6u:III, 7b6u:JJJ, 7b6v:AAA, 7b6v:BBB, 7b6v:CCC, 7b6v:DDD, 7b6v:EEE, 7b6v:FFF, 7b6v:GGG, 7b6v:HHH, 7b6v:III, 7b6v:JJJ, 6y63:AAA, 6y63:BBB, 6y63:HHH, 6y63:III, 6y63:EEE, 6y63:DDD, 6y63:GGG, 6y64:D, 6y64:F, 6y64:G, 6y64:J, 6y64:B, 6y64:A, 6y64:C, 6y64:E, 6y64:H, 6y64:I
8 3bwr:A 267 271 0.5632 0.5506 0.5424 6.95e-100 3bwr:C, 3bwr:E
9 6esb:1 347 271 0.5556 0.4179 0.5351 2.07e-99 7b6a:AAA, 7b6a:EEE, 7b6a:BBB, 7b6a:CCC, 7b6c:DDD, 7b6c:EEE, 7b6c:III, 7b6c:JJJ, 6esb:6, 6esb:2, 6esb:3, 6esb:4, 6esb:5, 4mj0:A, 4mj0:B, 4mj0:C, 4mj0:D, 7zip:DDD, 7ziq:AAA, 7ziq:BBB, 7ziq:DDD
10 1sid:B 367 283 0.5785 0.4114 0.5336 1.47e-93 1cn3:A, 1cn3:B, 1cn3:D, 1cn3:E, 5cpw:A, 5cpw:B, 5cpw:C, 5cpw:D, 5cpw:E, 5cpx:A, 5cpx:B, 5cpx:C, 5cpx:D, 5cpx:E, 5cpy:A, 5cpy:B, 5cpy:C, 5cpy:D, 5cpy:E, 5cpz:A, 5cpz:B, 5cpz:C, 5cpz:D, 5cpz:E, 5cq0:A, 5cq0:B, 5cq0:C, 5cq0:D, 5cq0:E, 1sid:A, 1sid:C, 1sid:D, 1sid:E, 1sid:F, 1sie:A, 1sie:B, 1sie:C, 1sie:D, 1sie:E, 1sie:F, 1vps:A, 1vps:B, 1vps:C, 1vps:D, 1vps:E
11 7zim:CCC 265 271 0.5364 0.5283 0.5166 4.19e-93 4jcf:C, 3nxd:C, 3nxd:B, 4x0z:B, 4x0z:C, 4x0z:D, 4x10:B, 4x10:C, 4x10:D, 4x11:B, 4x11:E, 4x11:A, 4x12:A, 4x12:B, 4x12:E, 4x13:B, 4x13:C, 4x13:E, 4x14:B, 4x14:C, 4x14:D, 4x15:B, 4x15:C, 4x15:D, 4x16:B, 4x16:C, 4x16:D, 4x17:C, 4x17:D, 4x17:B, 7zil:BBB, 7zil:CCC, 7zil:DDD, 7zim:BBB, 7zim:DDD, 7zin:BBB, 7zin:CCC, 7zin:DDD, 7zio:BBB, 7zio:CCC, 7zio:DDD
12 6y9i:CCC 280 280 0.5556 0.5179 0.5179 7.01e-93
13 6zlz:B 371 284 0.5747 0.4043 0.5282 4.25e-92 4fmh:B, 4fmh:H, 4fmh:K, 4fmh:M, 4fmh:O, 4fmh:Q, 4fmh:T, 4fmi:A, 4fmi:T, 4fmi:E, 4fmi:M, 4fmj:K, 4fmj:M, 4fmj:O, 4fmj:Q, 4fmj:S, 4fmj:T, 4fmj:H, 6zlz:A, 6zlz:C, 6zlz:D, 6zlz:E, 6zlz:F
14 6y5y:D 285 287 0.5556 0.5088 0.5052 4.92e-90 6y5x:A, 6y5x:C, 6y5x:D, 6y5x:E, 6y5x:I, 6y5y:A, 6y5y:B, 6y5y:C, 6y5y:E, 6y5y:F, 6y5y:G, 6y5y:H, 6y5y:I, 6y5y:J
15 6kuk:C 249 90 0.0920 0.0964 0.2667 1.6 6kup:C
16 2gbx:D 170 100 0.0996 0.1529 0.2600 3.8
17 2avn:A 247 32 0.0421 0.0445 0.3438 5.1 2avn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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