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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IEQPRWASKDPAAGKASTPDEKIVLEFMDALTSNDAAKLIKYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFKVMSIDAVE
VFHIGSSKGLVFTERVDVLRALPTGKSYNLSILGVFQLTDGKITGWRDYFDLREFEEAVDLPLR

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4r9k:C 160 144 1.0000 0.9000 1.0000 5.74e-105 5jpu:A, 5jpu:B, 4r9k:A, 4r9k:B, 4r9l:A, 4r9l:B
2 5ck6:A 154 144 0.9236 0.8636 0.9236 4.63e-98 5ck6:B, 5clk:A, 5clk:B, 5gkw:A, 1nu3:A, 1nu3:B, 1nww:A, 4xbt:A, 4xbt:C, 4xby:D, 4xby:B, 4xdv:C, 4xdv:D, 4xdv:A, 4xdv:B, 7xee:A, 7xee:B, 7xef:A, 7xef:B, 7xef:C, 7xef:D, 5yao:A, 5yng:A, 5yng:B, 5yqt:D
3 5aih:A 125 122 0.3056 0.3520 0.3607 2.14e-16 5aih:B, 5aii:F
4 5aig:A 124 120 0.2500 0.2903 0.3000 6.42e-14 5aig:B
5 2bng:B 133 116 0.2361 0.2556 0.2931 3.17e-09
6 5hgr:A 315 44 0.1181 0.0540 0.3864 0.032 5hgr:B
7 1guz:A 305 66 0.1250 0.0590 0.2727 0.19 1guz:B, 1guz:C, 1guz:D
8 5ui2:A 316 38 0.1111 0.0506 0.4211 0.26 5ui2:B
9 1gv0:A 301 66 0.1250 0.0598 0.2727 0.28 1gv0:B
10 2a92:C 318 37 0.0903 0.0409 0.3514 0.45 2a92:A, 2a92:B, 2a92:D, 2a94:A, 2aa3:A, 2aa3:B, 2aa3:C, 2aa3:D, 4b7u:A, 5hru:A, 5hru:B, 5hto:A, 5hto:B, 5hto:D, 5hto:E, 1oc4:A, 1oc4:B, 4plz:A, 1t24:A, 1t25:A, 1t26:A, 1t2c:A, 1t2d:A, 6txr:A, 6txr:B, 6txr:C, 6txr:D, 3zh2:A, 3zh2:B, 3zh2:C, 3zh2:D
11 7qd1:A 311 44 0.1111 0.0514 0.3636 0.48 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
12 7ekr:B 309 40 0.1181 0.0550 0.4250 0.68 7ekr:A
13 6pq1:A 320 44 0.1111 0.0500 0.3636 0.73
14 4plf:B 330 37 0.0903 0.0394 0.3514 1.0 4plc:A, 4plc:B, 4plc:C, 4plc:D, 4plf:A, 4plg:A, 4plg:B, 6vdj:A
15 1bag:A 425 30 0.0833 0.0282 0.4000 1.3 3dc0:A, 1ua7:A
16 3aw9:A 304 88 0.1944 0.0921 0.3182 4.5 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
17 7zsg:1 314 40 0.1042 0.0478 0.3750 4.6 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
18 4plt:B 319 37 0.0764 0.0345 0.2973 5.6 4plh:A, 4plh:B, 4plh:C, 4plh:D, 4plt:A, 4plt:C, 4plt:D, 4plv:A, 4plv:B, 4plv:C, 4plv:D, 4plw:A, 4plw:B, 4plw:C, 4plw:D, 4ply:B, 4ply:A, 4ply:C, 4ply:D, 4ply:F, 4ply:E, 4ply:G, 4ply:H
19 5e34:A 323 66 0.1181 0.0526 0.2576 9.0 5e35:A
20 6wbr:A 942 61 0.1458 0.0223 0.3443 9.2 6wc0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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